G236558


Basic Information

Item Value
gene id G236558
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20845651 ~ 20886276 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU320971
TTTATTAAaatcctctgtctctttctctctgaggTAACTGTCTGtcttccctgtctgtctctatgtatgtctgtctgtcttccctGTTTGTCctacctgtctgcctgtctaacctgtctgtctaactttctgtccatctgtctgtctgtctgtctttcttccctacctgtttgtctgtctgtctaacctgTCCgtttaacctgtctgtctgtctttcttccctacctgtctgtatgtttgtctgtctctacctgtctgtctgtctgtctgtctgtctgtctctacctgtctgtctgtctgtctgtctgttagggGGACCTCCGTGTTTATATATCTTTAAACGTTACCAAAGAGTACAGAAGTACGGCGGTTGTTGTCACGGTGATTCTGAACGGCTGGTTGTCTACCGgaggttgttgccatggtgattcAGCAGACTCAATCTTGAACAAGCAGctcagaaggagagagaagaagaatcAGATTTCTCTAAATGTTGAAGTGTTTATGATTGGTTCTCCTCCTGAGGCAGCGTGGAGGACAGGGCGTAGTCTGCCCCGATTCCCTCAGACACCACGGACACATCACCCTCTTCATCACCTCCCTTCTCCTCTTCATCACCCCCCTTCTTCTCTTCATCACCTCCCTTCTCCTCTTCATCACCTCCCTTCTCCTCTTCATCACCTCccttctccttttcctctttttcctctccctctttctctgcctGCTCGGCCGGAGCCAGCTGGGCGTGAACTTCGGTGAAGGACACTTCCTGTTTGGTGAAGGCTACTTCCTGTTCGGTGGAGGCTACTTCCTGGTCGGTGCTTCCCGGCGAGGTCAGCTGGACGTCGGTCTCCTCGGGGATCACCGCTTCCTCTTCCTGGAGAGACGCTTCGGTGGGATGAGAGTCGGAGCCGCTACGATGCTgagaacacagacagacagagaggtaagagagagagagacaggtaaccagacagacagagaggtaggttagagagacagacagacagacagacagacagacagacaggtatacCTTGCCAAAGCTGAAGGGAGAAACCTTCAGGCTGGAcaggttagacagacagacagataggtaggttagagagagagagagacagacagacagacagacagacagataggtaggttagagagacagaatgGTATACCTTGCCGAAGCTGAAGGGGAGAAACCTTCAGACTGGACAGgtttgagagacagacagacagacagacaggtaggtaggtttgagagacagacagacagacagacaga
>TU320972
TTTATTAAaatcctctgtctctttctctctgaggTAACTGTCTGtcttccctgtctgtctctatgtatgtctgtctgtcttccctGTTTGTCctacctgtctgcctgtctaacctgtctgtctaactttctgtccatctgtctgtctgtctgtctttcttccctacctgtttgtctgtctgtctaacctgTCCgtttaacctgtctgtctgtctttcttccctacctgtctgtatgtttgtctgtctctacctgtctgtctgtctgtctgtctgtctgtacctgtctgtctgtctgtctaacctgtctg
>TU320974
TTTATTAAaatcctctgtctctttctctctgaggTAACTGTCTGtcttccctgtctgtctctatgtatgtctgtctgtcttccctGTTTGTCctacctgtctgcctgtctaacctgtctgtctaactttctgtccatctgtctgtctgtctgtctttcttccctacctgtttgtctgtctgtctaacctgTCCgtttaacctgtctgtctgtctttcttccctacctgtctgtatgtttgtctgtctctacctgtctgtctgtctgtctgtctgtctgtctctacctgtctgtctgtctgtctgtacctgtctgtctgtctgtctaacctgtctg
>TU320976
TTTATTAAaatcctctgtctctttctctctgaggTAACTGTCTGtcttccctgtctgtctctatgtatgtctgtctgtcttccctGTTTGTCctacctgtctgcctgtctaacctgtctgtctaactttctgtccatctgtctgtctgtctgtctttcttccctacctgtttgtctgtctgtctaacctgTCCgtttaacctgtctgtctgtctttcttccctacctgtctgtatgtttgtctgtctctacctgtctgtctgtctgtctgtacctgtctgtctgtctgtctaacctgtctg
>TU320977
TTTATTAAaatcctctgtctctttctctctgaggTAACTGTCTGtcttccctgtctgtctctatgtatgtctgtctgtcttccctGTTTGTCctacctgtctgcctgtctaacctgtctgtctaactttctgtccatctgtctgtctgtctgtctttcttccctacctgtttgtctgtctgtctaacctgTCCgtttaacctgtctgtctgtctttcttccctacctgtctgtatgtttgtctgtctctacctgtctgtctgtctgtctgtctgtctgtctctacctgtctgtctgtctgtctaacctgtctg

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU320971 True 1285 lncRNA 0.50 2 20883265 20886276
TU320972 False 309 lncRNA 0.45 2 20845651 20886276
TU320974 False 335 lncRNA 0.46 2 20845651 20886276
TU320976 False 301 lncRNA 0.45 2 20845651 20886276
TU320977 False 313 lncRNA 0.45 2 20845651 20886276

Neighbor

gene id symbol gene type direction distance location
LOC120554361 NA coding downstream 43381 20794346 ~ 20802270 (-)
LOC120554635 LOC104961873,LOC103363323 coding downstream 389588 20442981 ~ 20456063 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding downstream 465159 20375593 ~ 20380492 (-)
pnpla4 pnpla4 coding downstream 1089682 19749071 ~ 19755969 (-)
aox6 NA coding downstream 1191339 19622102 ~ 19654312 (-)
dytn NA coding upstream 79662 20965938 ~ 21075255 (-)
ftcd ftcd coding upstream 104614 20990890 ~ 21003269 (-)
LOC120554641 LOC103473932 coding upstream 240618 21126894 ~ 21149363 (-)
LOC120554016 NA coding upstream 765690 21651966 ~ 21691088 (-)
LOC120554648 NA coding upstream 814429 21700705 ~ 21725016 (-)
G236560 NA non-coding downstream 3906 20839612 ~ 20841745 (-)
LOC120554363 NA non-coding downstream 6884 20824834 ~ 20838767 (-)
G236644 NA non-coding downstream 14915 20830357 ~ 20830736 (-)
LOC120554364 LOC100693318,LOC101465085,LOC102292591 non-coding downstream 20836 20821734 ~ 20824815 (-)
G236569 NA non-coding downstream 44003 20801362 ~ 20801648 (-)
G236649 NA non-coding upstream 7964 20894240 ~ 20896132 (-)
LOC120554667 LOC108242155 non-coding upstream 34304 20920580 ~ 20927156 (-)
G236624 NA non-coding upstream 72038 20958314 ~ 20988474 (-)
G236659 NA non-coding upstream 102242 20988518 ~ 20989800 (-)
G236662 NA non-coding upstream 143661 21029937 ~ 21030262 (-)
G236349 NA other downstream 84659 20760708 ~ 20760992 (-)
G236340 NA other downstream 117224 20726403 ~ 20728427 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other downstream 477218 20367341 ~ 20368433 (-)
G236111 sts,LOC108241831 other downstream 1113114 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 1316409 19523504 ~ 19529242 (-)
LOC120554644 NA other upstream 6638 20892914 ~ 20920498 (-)
arl11 NA other upstream 54712 20940988 ~ 20951865 (-)
LOC120554013 LOC103366577 other upstream 314720 21200996 ~ 21242177 (-)
LOC120554014 NA other upstream 414005 21300281 ~ 21557021 (-)
LOC120554015 NA other upstream 748572 21634848 ~ 21651918 (-)

Expression


Co-expression Network