LOC120554013 (LOC103366577)


Basic Information

Item Value
gene id LOC120554013
gene name LOC103366577
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21200996 ~ 21242177 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU321138
tgtgtatatctgtgtgtatgtgtatatatctgtgtgtctgtgtgtatatatctgtgtgtgtgtatgtgtgtgtatatctgtgtgtgtgcgtgtatgtgtgtgtgtgtgttctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgttctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtatgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgcgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtatgtgtgtctctctgtctgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtatgtgtgtctctgtctgtgtgtgtgtgtgtatgtgtgtctctgtctgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtatcaggtAAAGATGCCATCTGGACCCAGTTCCCCTTCAAGACGGACTCGTACTCCGACTGCCACGGGCAGCAGTACGTGAAGAGGACCTGGTACCGCAAGTTTGTTGGTGTCCAGCTCTGCAACTCTCTCCGTTACAAGATCTACCTTAGTGACTCTCTcaatgGGAACTTCTACAACATCGGGGACCAGACGGGCTTCGGCGAGGACCACTGTCAGTTCGTGGACTCGTTTCTGGACGGCAGGACCGGACGCCAGCTCAGAGCAGACCAGCTGCCCCCCAGACCTGGTACCTGTCTCCCACACCCTGTCTTCCTCACACTGTCTCCCTCACACTGTCTCCCTCACCCTGTCTCTGGTATCTGTCTCCCTCACCCTGTCTCTGGTCCCAGACCTGGTAACCCCTCCAGTCTCCC
>TU321145
gtaagaccagcacgcccagaatgcacctgaacacacctccctgttagaccagcacgcccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcacctgaacacacctccctgtaagaccagcacacccagaatgcacctgaacacacctccctgtaagaccaacacgcccagaatgcacctgaacacacctccctgtaagaccagggTTAGGGGTGCAGGACCTGTTTCTGGTCCTGTctcagacgcacacacacacacacacacacacacacagacacacacagacacacacacacagacacacacagacacacacacacacacacacacagacacacacacacagacacacacagacacacacacacacacacacacacacacacacacacagacacacacacacccctaaccctgcatgtctccccctgAAGGGAACTTCTACAACATCGGGGACCAGACGGGCTTCGGCGAGGACCACTGTCAGTTCGTGGACTCGTTTCTGGACGGCAGGACCGGACGCCAGCTCAGAGCAGACCAGCTGCCCCCCAGACCTGGTACCTGTCTCCCACACCCTGTCTTCCTCACACTGTCTCCCTCACACTGTCTCCCTCACCCTGTCTCTGGTATCTGTCTCCCTCACCCTGTCTCTGGTCCCAGACCTGGTAACCCCTCCAGTCTCCC
>TU321152
CACTGGgttagagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcctctgtgtgtgtgtttctgtgtgtgtgtgtgtgtccggtgtgtttaagtgtgtctctctgtgtgtgtttaagtgtgtctctgtgtgtgtttaagtgtgtctctctgtgtgtgtttaagtgtgtctctctgtgtgtgttaaagtgtgtctctgtgtttttttaaataaaaaaaataaacagtcaGGGCatctttaaatctttaaatataGCAAACATGCCTCGTCTTCtagatatattttattttggttaaaATAATGGGAAGCTGGCTCCCTGGAAGATTATTTTCATAACTTATTTATCAGAAAGGTCTTCGATTACATTCAGttaattcttcttcttcttcttcttctgggtCAACATTTACTTTATGTCTGTCTCTACGAGAGGCGGCTaacggtgtgtgtctgtgtgtgtctctgggtgtgtgtgtgtgtgtgtgtgtgtttgtgtgcgagtgtctgtgtgtgtgtctctgtgtgtgtgtgtgtatgtgtctttttttgaaatgtttttgcgatgtttttgacatttctggcacttttattttaaatatcgAGATACATATCATCGTCCGAGTGACtcagcgttagcgttagcttcCGTTAGCTTCTGTTAGCTTCTGTTAGCATCCGTTATCCTCTCGTAGAGACAAACGTTTAAATAACGTTCTGTCAGAAAGGTCAGGAGTCAGTCTGTGGCGCTGGCCATGtttttatattgttatgtttttatatttttatgttttcattttaaacaataaagaattTTTGATtcgtttttttaaagaaa
>XM_039792561.1
CCTAACTGTGCTCAGACGCTTAGTGAAGTTGTCTTCAGCTTCTgattcttcatcatcatcatcctcatcctcttctTCTGCAGCTGTGAGATTTAGgagctcttcttcttcatcatcatcatcttcttcttcttcacgaTGGCGAGCTGCGCCCTGCGAGGCGTCCTGCTGTTGCTCGGGGCGACCAGTCTCCTCGCCGTTGGCCCGCTgccaccaatcagagCGCGGCGCCAGAACATGAGGGTTCGGATCCAGGCCACGGCCGACACCATCGTGATGACCTTCGTGCGCCCGAGCCCCGAGGTGAAGCTGGAGGGATACATCCTGGGATACGGCAGCAGCGTCTTCCCCAAACAGTTCATCCAGCTACCGGAGAACGGACGGTCCTACGAGACGGAGATAGATGCAGAACCCAAATACCTGGTGGCCGTGCAGCCAATCCCGGTCAACGACGTCAAGAAACACTGCACAGgGCAGGTGGACCTGGAGAAGCCTCTGCAGCTCCTGATTGGCTCGGTGAGTCCCAGCGCGGTGCTGCTGTCCTGGAGGAACTCCCTGAAGACGCCGTACAGCCAGGACATCATGGACCAGTGTCTGGAGGACGGgttcTACACGGTCCGGTACCGGCAGAGGAACAGGAAGTGGACCTACCAGACGTGTCCGACCGGCGACATGGTGATCGACCACCTGGAGCCCAACACGCCGTACGAGTTCGCCGTGCGGTCCAACACCGGGGGACGCAGCGGCGCCTGGAGCAGACCGGTCATACACAGCACCAGCATGGGAGATAAGACCAAACCGAAGCCATATAAACTGCGTAATCCTCTGGCCAAGCCGCTGAAACCTCTGGTGTCTCGCGGCCTGTTCCCCCCCCGGCTCGCTCTTCACAACAGGACCAGACTCTCAACACTGACCAAAACCTCTGGAGCTCCTCACACTTCTcatgCCTTACTTCCTGCAGCGCCGCCTGAGAGCCGCCAGGAGACGCTCCCATTGGCCGGCTCTGCCGAGCCCAAACCGCCCCGCGACCCCATCGACAGAGGAAACGTCGTAACAAACGAGACCAATCGACCAGCTGATCCACTTCCTGTCTTCCCCCAACTCCTGCCCCCCCaagccccccctcctcctcccgccatcaccaccccccccctccctaaATTACCGTCCAATGGCGGCTCACTTCCTGGGCAGACGGCGTCCAATCAGGCGCCAGAGACGCCGCGTAAACCTGCTGCTGTCGGCCAATCACAGGACGGCTCGTCGCTGCTGAGGTCCGCTCTGGCCAATGAGAGAGCCAGAACTAACAGCTTGGGTCAAAGCAGCAGCCGAAACGCGTCGCCACGACTACCGGTGCAGCCCTACAGCCCGTCGGCTACAGCGGTTGCCAGATCCCTGAGACCGGCCTCCAGAAACCCCCTTTTACCTCTCAGACACACTCGCCCTACTAACGGACAGCTACCCCGCGGCTACCCGCCTAAACCCGCCATATGGTCCCGACCACGCCAGGGGTTGCCGGTGCGCCCGTCCGTATCGATCAACAAGAAGCTGAACCAAGTGGGAGAAACGGCCGCTGACAAGGTGAACAACTTTAAGCAGACCGACCGGCTGGTGGTCCTGAAACCTAAAGTCCTGCTGGCGACCGCCAAGACCCCCAAACCGGACCGGAAACCCACCACCACGGCACCGCCAAGCACCGCCGCGAGTCGCCAGGAGAGCTGGGAGGACTCTGAGCTCTTTAAATCCCAGCCGGCCTCCGACGTCGATGCTCTGGGGAAGAAACGTTACGTTGCTCCTCATGTGATCTACCAAACGGGGAAGAAACCAGACGAGCCGTGCTCCATCACTTCCTCTCTGAGCTTCTTCCCATTGGACGGGCCGGCCGAGGCCAACGTGACGGCCCCCCCGAGGTCCCCCCCCTCCAACCTCACCGTGGTAACGGTGGAGGGGTGCCCCTCCTTCGTCATCCTGGACTGGGACAAGACCGACAACGACACCACCGaATATGAAGTGATCTCCACGGCTAAGGGACCGGACGGTGAGAAGGTCTCCATCCTGACCACGGACCAGACCCACACCACCGTAGAGAACCTCAAACCGGAGAGCAGTTATGAGTTTAAAGTGAAGCCCAAGAACGAGCTCGGGGCCGGACCTCCTAGTGAGCCTGTTACCTTCAGCACAGagtcagctgATCCTCGAGTCAGTGAGAACGTTTCAGgtAAAGATGCCATCTGGACCCAGTTCCCCTTCAAGACGGACTCGTACTCCGACTGCCACGGGCAGCAGTACGTGAAGAGGACCTGGTACCGCAAGTTTGTTGGTGTCCAGCTCTGCAACTCTCTCCGTTACAAGATCTACCTTAGTGACTCTCTcaatgGGAACTTCTACAACATCGGGGACCAGACGGGCTTCGGCGAGGACCACTGTCAGTTCGTGGACTCGTTTCTGGACGGCAGGACCGGACGCCAGCTCAGAGCAGACCAGCTGCCCCCCAGACCTGGTACCTGTCTCCCACACCCTGTCTTCCTCACACTGTCTCCCTCACACTACCTGGTAACCCCTCCAGTCTCCCTCACCCTGTCTCCCTCACCCCGTCTCTGGCCACTGGgttag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU321138 False 1159 TUCP 0.51 3 21201915 21206810
TU321145 False 700 lncRNA 0.57 2 21201915 21203194
TU321152 False 857 lncRNA 0.38 2 21200996 21201884
XM_039792561.1 True 2613 mRNA 0.60 23 21201874 21242177

Neighbor

gene id symbol gene type direction distance location
LOC120554641 LOC103473932 coding downstream 51633 21126894 ~ 21149363 (-)
dytn NA coding downstream 125741 20965938 ~ 21075255 (-)
ftcd ftcd coding downstream 197727 20990890 ~ 21003269 (-)
vps16 vps16 coding downstream 333196 20853565 ~ 20867800 (-)
LOC120554361 NA coding downstream 398726 20794346 ~ 20802270 (-)
LOC120554016 NA coding upstream 409789 21651966 ~ 21691088 (-)
LOC120554648 NA coding upstream 458528 21700705 ~ 21725016 (-)
LOC120554675 NA non-coding downstream 1749 21191719 ~ 21199247 (-)
LOC120554677 NA non-coding downstream 17071 21169795 ~ 21183925 (-)
G236572 NA non-coding downstream 123200 21069316 ~ 21077796 (-)
G236673 NA non-coding downstream 148923 21051507 ~ 21052073 (-)
G236662 NA non-coding downstream 170734 21029937 ~ 21030262 (-)
LOC120554668 NA non-coding upstream 82258 21324435 ~ 21325498 (-)
G236628 NA non-coding upstream 102524 21344701 ~ 21345183 (-)
LOC120554669 LOC108250351,LOC103477372 non-coding upstream 112870 21355047 ~ 21357342 (-)
G236711 NA non-coding upstream 130937 21373114 ~ 21373378 (-)
G236618 NA non-coding upstream 133260 21375437 ~ 21381005 (-)
arl11 NA other downstream 249131 20940988 ~ 20951865 (-)
LOC120554644 NA other downstream 280498 20892914 ~ 20920498 (-)
G236646 NA other downstream 337685 20862680 ~ 20863311 (-)
rgn LOC103371141 other downstream 347613 20843492 ~ 20853383 (-)
G236349 NA other downstream 440004 20760708 ~ 20760992 (-)
LOC120554014 NA other upstream 58104 21300281 ~ 21557021 (-)
LOC120554015 NA other upstream 392671 21634848 ~ 21651918 (-)
G236611 NA other upstream 431515 21673692 ~ 21674838 (-)

Expression


Co-expression Network