LOC120553992 (hps3)


Basic Information

Item Value
gene id LOC120553992
gene name hps3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15284502 ~ 15285185 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792541.1
ATGTCGGATACACACCCCAACGAACTACACGCACCTTCAAGATGCAGGCCGCTGAAGAGCGCAGACGATCTGaTGAACTCATGCTCCGATTACGGTGCTCTGTACCTATGGCTCACTGCTCTGAATCAAGCTAAAAATACCAGCTCCCAACACCAGGAGGCGCTATACAAACTGCAGTCTCTCCTGTGTGGTCCGTCCCTGTCCGTGGGCTTCATCGTGCCTCTTATGGAGCGTCTGTCAGAGGAATCCTTATGGGGCTTCAGCCTGCACCTCCTCTGCACAACCAGAAGGGGGCAGTACGACAGCAGCATTGAAAAGCTGCTGGACCGATGTGCTCAGGCCATCATAGCCTACGCCAACCACCAGTTACAAGACAAACATATGGTCTGTACTGAGCAGTAGCCTGAACTGTGAAGTTTGTCACTATTTCAC

Function

symbol description
hps3 Predicted to be involved in organelle organization. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome and Hermansky-Pudlak syndrome 3. Orthologous to human HPS3 (HPS3 biogenesis of lysosomal organelles complex 2 subunit 1).

NR:

description
PREDICTED: Hermansky-Pudlak syndrome 3 protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792541.1 True 432 mRNA 0.52 3 15284502 15285185

Neighbor

gene id symbol gene type direction distance location
LOC120554245 NA coding upstream 214118 15061124 ~ 15070384 (+)
LOC120554076 NA coding upstream 490037 14651142 ~ 14794465 (+)
cryaa cryaa,LOC104954342 coding upstream 639007 14641713 ~ 14645495 (+)
LOC120554576 hsf2bp coding upstream 647683 14615057 ~ 14636819 (+)
ccdc14 NA coding upstream 685564 14589062 ~ 14598938 (+)
LOC120553993 NA coding downstream 49055 15334240 ~ 15372849 (+)
LOC120554259 NA coding downstream 165086 15450271 ~ 15456137 (+)
LOC120554262 NA coding downstream 171372 15456557 ~ 15458660 (+)
LOC120554210 zbed1 coding downstream 375110 15660295 ~ 15665637 (+)
LOC120554235 NA coding downstream 423345 15708530 ~ 15856139 (+)
LOC120554269 NA non-coding upstream 83761 15197999 ~ 15200741 (+)
G234919 NA non-coding upstream 238982 15045224 ~ 15045520 (+)
G234909 NA non-coding upstream 260763 15023439 ~ 15023739 (+)
G234908 NA non-coding upstream 263938 15020232 ~ 15020564 (+)
G234895 NA non-coding upstream 270790 15003629 ~ 15013712 (+)
LOC120554271 NA non-coding downstream 183629 15468814 ~ 15474007 (+)
LOC120554283 NA non-coding downstream 278565 15563750 ~ 15566563 (+)
G235056 NA non-coding downstream 329031 15614216 ~ 15614553 (+)
G235074 NA non-coding downstream 381687 15666872 ~ 15667356 (+)
LOC120554272 NA non-coding downstream 391792 15676977 ~ 15683490 (+)
LOC120554227 NA other upstream 242058 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 374427 14806527 ~ 14910075 (+)
G234651 NA other upstream 1139632 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 2081690 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 2258982 13002963 ~ 13025520 (+)
LOC120554234 NA other downstream 1103512 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 1471380 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 1475173 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 1476314 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 1477351 16762536 ~ 16762608 (+)

Expression


Co-expression Network