LOC120553995


Basic Information

Item Value
gene id LOC120553995
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16000290 ~ 16033713 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792544.1
GACTCTTaaaacacttttattttgaagggcaGTGTGTAGCgcaagttgtgtttgtgtttccggGTCCCGGAAGACGCTACGACCTCCGTCCCATTGTTTGCATTTTACCTCGTGATGAGGACGGCGGAGTGAAACGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGTCGGGGAGAAGTTGAGGAGAGGCACTTCAACATGAACTCTGAGAGGAAACTGTCAGCTGACCAGTGGAGAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCACCAGTCTGGACCAGGAGGACACAAAGCCCCCATatattaaagaggaacaggagggaCTCCGGATCAGTCAGAATAAAGAACAGCTTCAAGGGTccgaggaggctgatatcactaAGTTCACATTCACTCTGGTCCCTGTTAAGAGTGAAAATGATGAAGAGAAACCTACGttctcacagcttcatcaaagacaaactgaagagattaaaacagaagctgatggagaggactgtggaggaccagaaacAGCCATGAAATCAGATCCGGATACACATTTACAACCAGATACTGATGAcaagactggagactcttctaaACCTGAggctgatgacagtgctgattggaaggagaccagagaacctcagtcaggttTAAACTATCTGAATAATGATAGATTCCCTGTTAGTGATTCAAGATGCACTACTGATGAGAAAGcatttagctgctctgagtgtgggaaaagatttggcACCAATGGAGATGTGACGAggcacatgagaatccacacaggagaaaaaacatttagctgctcagtctgtaagaaagatTTTGGAAGGAGTGGAAGTTTAAAGAGACACATGATaattcacacaggagagaaaccatttagctgctcagtctgtaagaaagatTTTAAACGGAGTGGTcatttacagacacacatgagaatccacacaggagagaaacaatTTAACTGCTCTATCTGTAAGAAAGTTTTTAAACGGAGTGGAAacttacagacacacatgagaatccacaaaGGAACGACcccatttagctgctcagtctgtaagaaagcttGTGAAGGGAGTGGAGaattacagacacacatgttaagccacacaggtgagaaaccatttagctgctcaatTTGTAAGAAAGATTTTGTGAAGCGTGGAAACTTAGAGATACACATGAGAATCCATACAGGTTCAAACTCTCTGAATAATGATAAATTCCCTGTTAGTGATTCAAGACGTACTAGTGGTGAGAAAGCATTTAGATGCTGtgagtgtgggaaaagatttggcACCAATGGAGATGTGACAAGGCACATGAGAACTcatacaggagagaaaccatttagctgcagaatctgtaagaaagcttttacCGTTAGTGGAAATTTACAGAcccacatgagaatccacacaagAGAGAAACCActtagctgctcagtttgtaagaaaGATTTTGTAATGTGTGGAAacttacagacacacatgaaAATCCATACAGGTTCAAACTCTCTGAATAATGATAGATTCCCTGTTAGTGATTCAAGATGTACTATTGCTGAGAAAGcatttagctgctctgagtgtgggaaaagattcGGCACCAATGGAGATGTGACGAGGCACATGAGATCTcatacaggagagaaaccatttagctgcacaatctgtaagaaagcttttacCGTGAGTGGAaatttacagacacacatgagagtccacacaggagagGCTCCTAGTATTCTCCACTGTGTCCACTGCGTTCTCTTTGTGCACTCTCCTGTCCTTTCCTATGTGTCCTATTTGTGCACCTGTGCTTTcctctgtgtgactgtgtctcctgtgtgtgtcctgtccaCTATTCGTGTGGTGATGTGTCTGGTCATGTCGTCTACCTGTGTCGTGGTGTCCTCACTCCTGGCCGTGGATGACGTCGTGGCTGTGGCCACTCCCCACTTGTCTTGCCTGTCTCCTGTCCTACGGTCTcctcttttgtgtgtttgtcgtGTGACAGAATGGACCCAAAAGCAAGGCTTAACAACAGAAGGGTTTATTGAGTTAAACGAGGAGAGGAGGTGGACGCCAGGGATAAGAGTGTGGGCACGAGGGCTGGAGAAGGCGAGGGAGCTCAGGGAGAACAGGGAGACCGAGGTCGAGGAATCCGAGGAAGGGACACTGGAAACAACGGAGCCGAAGGCAGAGTGGAGCAGGGAGTCGCGAGGACGGGACCGGACGGTGAGGCCAACTCACTGGAGGTGGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792544.1 True 2342 mRNA 0.46 5 16000290 16033713

Neighbor

gene id symbol gene type direction distance location
LOC120554249 NA coding upstream 7554 15985434 ~ 15992736 (+)
trnas-uga_32 NA coding upstream 49484 15950725 ~ 15950806 (+)
trnas-uga_31 NA coding upstream 51950 15948259 ~ 15948340 (+)
trnas-uga_30 NA coding upstream 54416 15945793 ~ 15945874 (+)
trnas-uga_29 NA coding upstream 56886 15943323 ~ 15943404 (+)
trnak-cuu_19 NA coding downstream 9301 16043014 ~ 16043085 (+)
trnat-agu_18 NA coding downstream 9615 16043328 ~ 16043401 (+)
trnat-agu_19 NA coding downstream 10622 16044335 ~ 16044408 (+)
trnak-cuu_20 NA coding downstream 13333 16047046 ~ 16047118 (+)
trnat-agu_20 NA coding downstream 13648 16047361 ~ 16047434 (+)
G235152 NA non-coding upstream 116280 15883763 ~ 15884010 (+)
LOC120554272 NA non-coding upstream 316800 15676977 ~ 15683490 (+)
G235074 NA non-coding upstream 332934 15666872 ~ 15667356 (+)
G235056 NA non-coding upstream 385737 15614216 ~ 15614553 (+)
LOC120554283 NA non-coding upstream 433727 15563750 ~ 15566563 (+)
LOC120554276 NA non-coding downstream 91748 16125461 ~ 16126791 (+)
G235185 NA non-coding downstream 161849 16195562 ~ 16195700 (+)
G235216 NA non-coding downstream 187707 16221420 ~ 16222735 (+)
G235243 NA non-coding downstream 289128 16322841 ~ 16324248 (+)
trnat-agu_42 NA non-coding downstream 472908 16506621 ~ 16506694 (+)
LOC120554227 NA other upstream 957846 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1090215 14806527 ~ 14910075 (+)
G234651 NA other upstream 1855420 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 2797478 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 2974770 13002963 ~ 13025520 (+)
LOC120554234 NA other downstream 354984 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 722852 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 726645 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 727786 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 728823 16762536 ~ 16762608 (+)

Expression


Co-expression Network