LOC120554000 (LOC100690921,LOC103360025)


Basic Information

Item Value
gene id LOC120554000
gene name LOC100690921,LOC103360025
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17862318 ~ 17877888 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792549.1
ATGGAGCTGAGAAGAGACTTGACCCGGACCTCAGCGCTCTATTACTGCTGCTGGATCTGCATCCACTCCGCGCTGGCGGAGGACTGGACTCGAGTTCACACGGAGGACGAGCTCTTCAGGAGATTGTTTCGGGGCTACAGCAAGTGGACGCGTCCAGCGCAAAACATCACCGACGTGGTTATCGTGAAGTTTGGCCTCTCCATCGCACAGCTGATAGACGTGGATGAGAAAAACCAGATGATGACGACCAACGTGTGGCTGAAACAGGAATGGACGGACTATAAGCTGCAGTGGAGTCCCTCCGACTTCGACAACGTGACGTCCATCAGGGTCCCTTCTGAGCTCATCTGGGTGCCGGACATTGTGCTGTACAACAATGCAGACGGAGAGTTCGCCGTCACCCACATGACCAAGGCCCATCTCTTTCACACCGGCCGTGTCCGCTGGGTGCCCCCGGCCATCTACAAGTCCTCCTGCTCCATTGACGTCACCTTCTTCCCTTTCGACCAGCAGAGCTGCAAGATGAAGTTCGGCTCCTGGACGTACGACCGCGCCAAGATCGACCTGGAGCCCTTTGAGAACACGGTGAACCTGAAGGATTACTGGGAGAGTGGAGAGTGGGCGATTGTCAACGCCGTGGGCACCTACAACACCAAGAAGTACGACTGCTGCCACGAGATCTACCCGGACATCACCTACTATTTTGTCATCCGCCGCCTCCCGTTGTTCTACACCATCAACCTCATTATCCCCTGCCTCCTCATCTCCTGCCTGACCGTCCTGGTCTTCTACCTCCCGTCGGACTGCGGCGAGAAGATCACGCTGTGCATCTCCGTGCTTCTGTCGCTCACCGTCTTCCTGCTGCTCATCACGGAGATCATCCCGTCCACGTCGCTGGTCATACCGCTGATCGGGGAGTATCTGCTCTTCACTATGATCTTTGTCACGCTGTCCATCGTCATCACCGTGTTCGTGCTGAACGTGCACCATCGCTCGTCGGCGACTCACACCATGCCTGGATGGGTCCGGCGGCTGTTCCTGTCGGCGGTGCCGCGCTGGCTGTGCATGAAGCGTCCGAAACATGGTGTCAGGCCTGTAAGGCGGTGCCACCTGACTGATGGACTCCTCCCCATCCAGACTCCGGGCCCCTCCCACAGCTCGCCCGCCTGGATCACTCAGGAGTCTGATATCCATCTCCATGGTTACCGGGAGGACGAGAACAGTTGCCGCAGGAGCCGCCAGCTCAACTCCTCGGATGCAGGTGACGAAATCCACTACTGCAATCTCCACGGTTACGCAAACGCTCATCGCTCGGGGAGGTTTAGGGGGAAGGTAGCCGGGCCACCAAGGATTTCtcccctctcttcttctttccccCCGTCTCTGGGTTACATACTCCTCCCACAGAGACACTCCTCACTCGGCTCGGACTGGGACACCCCTCCTGAGGAGCGTGGTTCGTTCCAGAGCCCACCTGCCTCTGTGCCGTCTCCGGCGGTGCTCTCGGCCCTGGAGGGGGTGACCTACATCGCAGAGCATCTCAGAGCCGAGGATGTAGACTTCTCAGTGAAGGAGGACTGGAAGTACGTTGGCATGGTTGTAGACCGGATCTTTCTGTGGATGTTCATCATCGTGTGTCTGCTGGGGACCGTCGGACTCTTCCTGCCTCCGTGGCTCTCTGGGATGTTTTAGAATCAAACTGGaaatcaaaaaagaaagaaaaaatgaatacaataattaatttaaaaaaaagtg

Function

NR:

description
PREDICTED: neuronal acetylcholine receptor subunit alpha-2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0045202 synapse cellular_component
GO:0005892 acetylcholine-gated channel complex cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0015464 acetylcholine receptor activity molecular_function

KEGG:

id description
K05312 CHRNN; nicotinic acetylcholine receptor, invertebrate

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792549.1 True 1755 mRNA 0.57 8 17862318 17877888

Neighbor

gene id symbol gene type direction distance location
LOC120554260 NA coding downstream 129378 17718997 ~ 17732940 (-)
ahr2 NA coding downstream 173806 17604922 ~ 17688512 (-)
LOC120554202 LOC102788442 coding downstream 265168 17548583 ~ 17597150 (-)
LOC120554203 mfsd6 coding downstream 355057 17491167 ~ 17507261 (-)
nab1b nab1,LOC102789507 coding downstream 389159 17440396 ~ 17473159 (-)
LOC120554256 NA coding upstream 88836 17966724 ~ 17967809 (-)
LOC120554266 NA coding upstream 90078 17967966 ~ 17969403 (-)
LOC120554265 NA coding upstream 93313 17971201 ~ 17973177 (-)
LOC120554632 LOC103360035,LOC103370267 coding upstream 151948 18029836 ~ 18102031 (-)
abi2b abi2 coding upstream 236107 18113995 ~ 18143453 (-)
G235695 NA non-coding downstream 4040 17858066 ~ 17858278 (-)
G235691 NA non-coding downstream 7270 17854184 ~ 17855048 (-)
G235688 NA non-coding downstream 10977 17851068 ~ 17851341 (-)
LOC120554284 NA non-coding downstream 154822 17688970 ~ 17707496 (-)
G235635 NA non-coding downstream 317882 17512617 ~ 17544436 (-)
G235715 NA non-coding upstream 4515 17882403 ~ 17882848 (-)
G235717 NA non-coding upstream 11385 17889273 ~ 17889490 (-)
G235721 NA non-coding upstream 34979 17912867 ~ 17913167 (-)
G235722 NA non-coding upstream 52358 17930246 ~ 17930475 (-)
G235723 NA non-coding upstream 52644 17930532 ~ 17930985 (-)
s100b LOC103360204,LOC104927403 other downstream 117061 17734731 ~ 17745257 (-)
G235350 NA other downstream 758801 17064302 ~ 17103517 (-)
trnat-cgu_19 NA other downstream 1106253 16755993 ~ 16756065 (-)
LOC120554263 NA other downstream 1120030 16736186 ~ 16742288 (-)
G235387 NA other downstream 1246002 16611983 ~ 16616316 (-)
LOC120554370 LOC103370263 other upstream 393190 18271078 ~ 18327103 (-)
LOC120554371 mbd5,LOC102784158 other upstream 526338 18404226 ~ 18439418 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other upstream 1645616 19523504 ~ 19529242 (-)
G236111 sts,LOC108241831 other upstream 1853431 19731319 ~ 19732537 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other upstream 2489453 20367341 ~ 20368433 (-)

Expression


Co-expression Network