LOC120554054 (LOC100692262,LOC101156309)


Basic Information

Item Value
gene id LOC120554054
gene name LOC100692262,LOC101156309
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12494762 ~ 12522233 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792651.1
ACGGTTGACACGTGctgaagaagacaaaaaaaaaaaaaaaaaaaaattacaaaaataacgACAAATAATAATAACGGACACATCctggagttttattttgttttaagatTTTTGATGGTGCATCCTTTTTAAGGTGGAGTTTTTTTCTTCCCCAATCTGTACTTGAAGTGGGCAAGCATTAAGTCCACATCTTAGCCACCATGGGAAGAGGAGAAGGACGCGAGCAGTATGAGCTCGCTGCGACCTCGGAGCAGGGCAGCAAGAAGAAGGCGaaggggaagaagaaagagaaagatatgGACGAACTGAAGAAGGAAGTGGACATGGATGATCACAAGCTGACCCTCGATGAACTTAATCGCAAATATGGAACCGACCTCAACAATGGTTTGACTAGTGCCAAGGCTGCTGAGATTCTGGCTCGTGATGGGCCCAATGCCCTCACTCCTCCCCCCACCACCCCAGAGTGGGTCAAATTCTGCAAACAGATGTTTGGCGGTTTCTCGATGCTTCTGTGGACTGGTGCCCTCCTCTGTTTCCTGGCTTATGGTATCCAGGCTGCAATGGAGGATGAGCCTGCTAATGATAATTTGTACCTGGGTGTGGTGCTTTCCGCTGTCGTCATCATCACTGGTTGCTTCTCCTACTACCAAGAGGCCAAGAGCTCCAAGATCATGGACTCCTTCAAGAACCTGGTCCCACAGCAAGCCCTGGTTGTCCGTGACGGCGAGAAGAAGAACATCAACGCTGAGGAGGTGGTGGTCGGGGATTTGGTGGAGGTGAAAGGCGGTGACAGGATCCCCGCTGATCTGCGAATCATCTCGGCCCACGGCTGCAAGGTGGACAACTCCTCTCTGACCGGCGAGTCCGAGCCCCAGACTCGTACTCCCGACTTCTCCAACGAGAACCCGCTGGAGACCAGGAACATTGCTTTCTTCTCCACCAACTGTGTTGAAGGAACCGCCCGTGGTATCGTGATCAGCACCGGAGACCGTACCGTCATGGGTCGAATCGCCACCCTAGCCTCTGGACTCGAAGTTGGACGTACCCCCATCTCAATCGAGATCGAGCACTTCATCCACATCATCACCGGCGTGGCCGTCTTCCTCGGCGTGTCCTTCTTCGTCCTCTCCCTCATCCTCGGGTACAGCTGGCTGGAGGCCGTCATCTTCCTCATCGGTATCATTGTCGCCAACGTGCCAGAAGGTCTCCTGGCTACGGTCACCGTGTGTCTGACCCTGACCGCTAAGCGTATGGCGAAGAAGAACTGCCTGGTGAAGAACTTGGAAGCTGTCGAGACCCTGGGCTCCACCTCCACCATCTGCTCCGACAAGACCGGCACCCTGACCCAGAACAGGATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCACGAGGCCGACACCACCGAGAACCAGAgcgggacttcctttgacaggAGCTCTGCGACCTGGGCTGCCCTGGCCAGAATCGCCGGACTCTGCAACCGTGCCGTCTTCCTGGCAGAGCAGTCCAACCTTCCCATTCTGAagAGAGACGTGGCTGGCGACGCCTCGGAGTcggctctgctgaaatgtatCGAGCTGTGCTGCGGATCAGTCCAGGAAATGAGAAATAAAACCCCCAAAATTTCTGAGATCCCGTTCAACTCTACTAACAAGTACCAGCTTtccattcacaaaaatgcaacaCCTGAGGAGTCCAAGCACCTGCTGGTGATGAAGGGTGCCCCAGAGAGGATTTTGGACCGCTGCTCCACCATCATGATTCAGGGCAAAGAGCAGCCTCTGGACGAAGAGCTGAAAGACGCTTTCCAGAACGCCTACCTGGAACTGGGAGGTCTGGGAGAGAGAGTTCTGGGTTTCTGCCATTTCGTCCTGCCCGACGACCAGTTCCCAGAGGGCTTTGCTTTTGACACTGAGGAGGTGAACTTCCCCACTGAAAACCTGTGCTTCATCGGCCTCATGTCCATGATCGACCCTCCTCGTGCCGCTGTGCCCGACGCTGTGGGCAAATGCAGGAGCGCTGGAATCAAGGTCATCATGGTAACAGGTGATCACCCAATCACAGCTAAAGCCATCGCTAAGGGGGTGGGCATCATCTCCGAAGGCAACGAGACCGTCGAGGACATTGCCGCGCGTCTTAACATCCCAGTCAACGAAGTCAACCCAAGAGATGCCAAGGCCTGTGTCATCCACGGTGGAGACCTAAAAGATCTGGCCCCGGAGCAGCTTGACGACATCCTGAAGTACCACACCGAGATAGTTTTCGCCAGAACCTCCCCGCAGCAGAAACTGATCATTGTGGAGGGCTGCCAGAGACAGGGAGCCATTGTGGCTGTGACAGGTGATGGTGTGAACGACTCTCCAGCTCTGAAGAAGGCCGACATTGGTGTCGCCATGGGGATCTCTGGATCTGACGTCTCCAAGCAGGCCGCTGACATGATCCTGCTCGACGACAACTTTGCCTCCATCGTTACCGGAGTGGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACTCTGACCAGTAACATCCCTGAAATCACacccttcctcctcttcatcatcgcCAACATCCCTCTGCCCCTGGGAACCGTCACCATCCTCTGTATTGACCTGGGAACTGACATGGTCCCTGCCATCTCCCTGGCTTATGAAGCAGCTGAGAGCGACATCATGAAGAGACAGCCCAGAAACCCCAAAACCGACAAACTGGTGAACGAGAGGCTCATCAGCATAGCCTACGGACAGATCGGTATGATCCAGGCACTGGCAGGTTTCTTCACCTACTTTGTGATCTTGGCTGAAAACGGCTTCCTGCCCTCCACCCTGCTGGGCATCCGAGTGAACTGGGATAACAAATACATTAATGATCTGGAGGACAGCTATGGACAGCAGTGGACTTACGAGCAGAGGAAGATCGTGGAGTTCACGTGTCACACAGCTTTCTTCGCCAGTATTGTTGTCGTCCAGTGGGCCGATCTGATCATCTGCAAGACCAGGAGGAACTCGGTCTTCCAACAGGGCATGAAGAACAAGATCCTGATCTTTGGGCTGTTTGAGGAGACCGCCCTGGCCGCCTTCCTCTCTTACTGCCCGGGCATGGGCGTCGCCCTCAGGATGTACCCTCTCAAgCCCAACTGGTGGTTCTGCGCCTTCCCCTACTCCCTGCTCATCTTTATCTATGATGAAATCCGTAAGCTGATCCTCAGACGCAGCCCAGGCGGTTGGGTGGAACGGGAGACCTACTATTAAAGACCCGTCAGTCCGGTCAGCTCGCATCTTCTCCTCCACCACCGTCTTTGCATGAATATTGTCTTGCTGctcggaataaaaaaaaatgtaacctcCGTGAACAAAAATTGGAAAGTGTTTTTATATTAGGGAATGCTTGATACTACTATTAGACAAATACTGAGATGGAACGTgccgatgatgatgatgttgacaAAATGATAATGCTAATAATGACATGAACACTGAACATTGACATGACTATGCGTGCCTTGTTTCTGAAACAGGACCAAttttatacatgtttttaacAGTTATAAACGTTCAATAAAAATGTGCTCGAGTCAGGTCCCACAA

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792651.1 True 3611 mRNA 0.52 23 12494762 12522233

Neighbor

gene id symbol gene type direction distance location
LOC120554056 LOC103358968,LOC105923069 coding upstream 4377 12472334 ~ 12490385 (+)
LOC120554057 LOC103358968,LOC105923069 coding upstream 26297 12449724 ~ 12468465 (+)
LOC120554055 LOC103358968 coding upstream 53077 12415040 ~ 12441685 (+)
LOC120554148 map2,LOC106530705,LOC103139183,LOC106940425,LOC106914874,LOC103389551,LOC103357963,LOC102289154 coding upstream 210130 12218113 ~ 12284632 (+)
acadl acadl coding upstream 277880 12210994 ~ 12216882 (+)
ccdc28a ccdc28a coding downstream 257291 12779524 ~ 12784322 (+)
si:dkeyp-34c12.1 NA coding downstream 370854 12893087 ~ 12896442 (+)
LOC120554719 LOC104966735,LOC102306959,LOC103389234,LOC102212482 coding downstream 398910 12921143 ~ 12941389 (+)
jagn1b jagn1,LOC103376239,LOC102797060 coding downstream 424329 12946562 ~ 12951360 (+)
wbp4 wbp4 coding downstream 464753 12986986 ~ 12991446 (+)
G234301 obsl1,LOC100691457,LOC102777652 non-coding upstream 117800 12376687 ~ 12376962 (+)
G234300 obsl1 non-coding upstream 118485 12375342 ~ 12376277 (+)
G234299 obsl1 non-coding upstream 119539 12374950 ~ 12375223 (+)
G234298 obsl1,LOC100691457,LOC102777652 non-coding upstream 120702 12373786 ~ 12374060 (+)
G234297 obsl1,LOC102777652,LOC100691457 non-coding upstream 121070 12373423 ~ 12373692 (+)
LOC120554062 NA non-coding downstream 3670 12525903 ~ 12658477 (+)
G234353 LOC104946485,LOC107377203,LOC103358972,LOC105918555 non-coding downstream 117304 12639537 ~ 12643868 (+)
G234369 NA non-coding downstream 323956 12846189 ~ 12846545 (+)
G234372 NA non-coding downstream 362422 12884655 ~ 12885170 (+)
G234401 NA non-coding downstream 429349 12951582 ~ 12951976 (+)
LOC120554058 obsl1,LOC102777652 other upstream 125541 12358027 ~ 12369221 (+)
LOC120554357 NA other upstream 137585 12299632 ~ 12357177 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other upstream 342322 11852389 ~ 12152440 (+)
G234095 NA other upstream 1099416 11393664 ~ 11395346 (+)
G234085 mest other upstream 1114659 11362541 ~ 11380103 (+)
LOC120554049 ect2l other downstream 264408 12786641 ~ 12797654 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other downstream 480730 13002963 ~ 13025520 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other downstream 647137 13169370 ~ 13202812 (+)
G234651 NA other downstream 1593626 14115859 ~ 14144870 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 2284294 14806527 ~ 14910075 (+)

Expression


Co-expression Network