LOC120554056 (LOC103358968,LOC105923069)


Basic Information

Item Value
gene id LOC120554056
gene name LOC103358968,LOC105923069
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12472334 ~ 12490385 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792653.1
CCTCTGCTCTGGGTTGTGCAGAAGACAGGAAGCCACggggctgagagagagagagagagagagagtgtgcgcgcgagagagagagagagagagaggcggagGAAAGTTGCAATTTAAAAAGACAATTGGATTGACTGTTCTCAGACTTGCTTTGCAACCATGGGGCTGGGAAGAGGAAAAGATGAGTACAAACTGGCGGCAACTTCGGACGGTGGGGACAAGAAAACGAAGAAAGCCCAAGCAAAGAAGGATATGGATGATTTGAAGAAAGAAGTTGACCTGgATGACCACAAGTTAACCTTGGATGAACTTCACAGAAAATATGGAACCGACCTAACCAGGGGTCTTTCCAACAGCAGAGCAAAAGAGATCCTGGCCCGAGATGGCCCAAACGCCCTCACGCCTCCTCCCACAACGCCTGAATGGGTCAAGTTCTGTAAACAGCTGTTTGGTGGTTTCTCCATGCTGCTGTGGATTGGTGCGATCCTCTGCTTCCTCGCTTACAGCATCCAGGCTGTCTCAGAAGATGAACCGGCCAACGATAACCTGTACCTGGGTGTGGTGCTTTCCGCTGTCGTCATCATCACTGGTTGCTTCTCCTACTACCAAGAGGCCAAGAGCTCCAAGATCATGGACTCCTTCAAGAACCTGGTCCCACAGCAAGCCCTGGTCATCCGTGACGGCGAGAAGAAGAGCATCAACGCTGAGGAGGTGGTGGTCGGAGATTTGGTGGAGGTGAAAGGTGGAGACAGGATCCCCGCTGATCTTAGAGTCGTCTCTGCTCACGGCTGCAAGGTGGACAACTCCTCTCTGACTGGTGAATCCGAGCCTCAGACTCGTACTCCCGACTTCTCCAACGACAACCCTTTGGAAACCAGGAACATTGCTTTCTTCTCCACCAACTGTGTTGAAGGTACTGCCAGAGGAGTCGTCATCAACACCGGAGACCGTACTGTCATGGGTCGTATCGCCTGCCTGGCTTCTAGTCTGGAGGGTGGCAAAACTCCCATTGCCAAAGAGATTGAGCACTTTATCCACATCATTACGGGCGTGGCGGTCTTCCTGGGTGTTTCCTTCTTCATCCTCTCACTCATCCTTGGGTATGGCTGGCTGGAGGCCGTCATCTTCCTCATCGGTATCATTGTCGCCAACGTGCCAGAGGGTCTCCTGGCTACTGTCACTGTGTGTCTGACCCTGACCGCTAAGCGTATGGCGAAGAAGAACTGCCTGGTGAAGAACTTGGAAGCTGTCGAGACCCTGGGCTCCACCTCCACCATCTGCTCCGACAAGACCGGCACCCTGACCCAGAACAGGATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCACGAGGCCGACACCACAGAGAACCAGAGTGGGGCCTCCTTTGACAAGAGCTCTACCACCTGGGCTGCCCTGGCCAGAATCGCCGGACTCTGCAACCGTGCCGTCTTCCTGGCAGAGCAGACCAACGTCCCCATCCTGAAGAGGGATGTAGCTGGTGATGCCTCAGAAGCTGCCTTGCTGAAGTGTATTGAGCTGTGCTGTGGATCCGTTCGCGGCATGAGAGACAAATACCCCAATATTGCTGAGATCCCCTTCAACTCCACCAACAAATACCAGCTCTCCATCCACAAGAATTCAACTCCTGGAGAGACCAAGCACCTGCTGGTGATGAAAGGTGCCCCAGAGAGGATTCTGGACCGCTGCTCCACCATCATGATGAACGGCAAGGAGCAGCCTCTGGACGAAGAGCTGAAAGACGCTTTCCAGAATGCCTACGTTGAGCTGGGAGGACTTGGAGAGAGAGTTCTGGGTTTCTGCCATTTCAACCTGCCTGATGACCAGTTCCCAGAGGGCTTTGATTTTGACGCTGATGAGGTGAACTTCCCCACTGAAAACCTGTGCTTCATCGGCCTCATGTCCATGATCGACCCTCCTCGTGCCGCTGTGCCTGATGCTGTCGGCAAATGCAGGAGCGCTGGAATCAAGGTTATCATGGTCACAGGTGACCATCCCATCACAGCCAAGGCTATTGCTAAAGGTGTGGGTATCATCTCTGAAGGCAACGAGACAGTTGAAGACATTGCTGCCCGCTTGAATGTACCAGTCTCAGAAGTCAACCCCAGGGATGCCAAGGCCTGCGTTATCCACGGGGGTGAGCTGAAAGACATGAGCCCAGAGCTGCTTGACGATGTGCTGCAACACCACACTGAAATCGTCTTCGCCAGAACCTCCCCTCAGCAGAAACTTATCATTGTGGAAGGTTGCCAAAGACAGGGAGCCATTGTGGCTGTGACAGGTGATGGTGTGAACGACTCTCCAGCTCTGAAGAAGGCCGACATTGGTGTCGCCATGGGGATCGCTGGATCTGACGTCTCCAAGCAGGCCGCTGACATGATCCTGCTCGACGACAACTTTGCCTCCATCGTTACTGGAGTGGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATCGCCTACACTCTAACCAGTAACATTCCTGAGATTTCacccttcctcctcttcatcatcgcCAACATCCCTCTGCCCCTGGGAACCGTCACCATCCTCTGTATTGACCTGGGAACTGACATGGTCCCTGCCATCTCCCTGGCGTATGAAGAAGCTGAGAGTGACATCATGAAGAGACAGCCAAGAAACCCCAAAACCGACAAACTGGTGAACGAAAGGCTCATCAGCATAGCCTACGGACAGATCGGTATGATGCAGGCCGTGGCTGGCTTCTTCACATACTTTGTGATCCTGGCTGAAAATGGTTTCCTCCCCATGGACCTGCTGGGGATCAGAATGCTTTGGGACAACAAATATGTAAATGACCTGGAAGACAGCTATGGACAGCAGTGGACATACGAGCGCAGAAAGATCGTAGAGTTCACATGTCACACAGCTTTCTTCACTAGTATTGTGGTGGTCCAGTGGGCCGATCTGATCATCTGTAAGACCAGGAGGAACTCCATCCTGCAACAAGGAATGAAGAACCGTGTCCTCATCTTTGGTCTATTTGAGGAAACAGCTCTGGCTGCCTTCCTGTCATATTGCCCGGGCATGGACGTTGCCCTCAGAATGTATCCTCTCAAGCCATCTTGGTGGTTCTGTGCCTTCCCCTACTCCCTCCTCATCTTCCTGTACGACGAAGCCAGAAGATATATCCTCAGACGCAACCCAGGCGGTTGGGTGGAACAGGAGACATACTACTGACACAACAAGACACAAGTTATTTACTGCCATGTTACATATTTGTCTGAGATGGTAGTCAGACCCAAAAGACACAAAGCATGGATGAATAAATATAGATGTATTGATGTCAATGTTTTGATCTATATGTCAttcacaataaaacattttccatTCCATTGTA

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792653.1 True 3391 mRNA 0.52 23 12472334 12490385

Neighbor

gene id symbol gene type direction distance location
LOC120554057 LOC103358968,LOC105923069 coding upstream 3869 12449724 ~ 12468465 (+)
LOC120554055 LOC103358968 coding upstream 30649 12415040 ~ 12441685 (+)
LOC120554148 map2,LOC106530705,LOC103139183,LOC106940425,LOC106914874,LOC103389551,LOC103357963,LOC102289154 coding upstream 187702 12218113 ~ 12284632 (+)
acadl acadl coding upstream 255452 12210994 ~ 12216882 (+)
mylz3 LOC101075868,LOC104929359 coding upstream 263740 12205100 ~ 12208594 (+)
LOC120554054 LOC100692262,LOC101156309 coding downstream 4377 12494762 ~ 12522233 (+)
ccdc28a ccdc28a coding downstream 289139 12779524 ~ 12784322 (+)
si:dkeyp-34c12.1 NA coding downstream 402702 12893087 ~ 12896442 (+)
LOC120554719 LOC104966735,LOC102306959,LOC103389234,LOC102212482 coding downstream 430758 12921143 ~ 12941389 (+)
jagn1b jagn1,LOC103376239,LOC102797060 coding downstream 456177 12946562 ~ 12951360 (+)
G234301 obsl1,LOC100691457,LOC102777652 non-coding upstream 95372 12376687 ~ 12376962 (+)
G234300 obsl1 non-coding upstream 96057 12375342 ~ 12376277 (+)
G234299 obsl1 non-coding upstream 97111 12374950 ~ 12375223 (+)
G234298 obsl1,LOC100691457,LOC102777652 non-coding upstream 98274 12373786 ~ 12374060 (+)
G234297 obsl1,LOC102777652,LOC100691457 non-coding upstream 98642 12373423 ~ 12373692 (+)
LOC120554062 NA non-coding downstream 35518 12525903 ~ 12658477 (+)
G234353 LOC104946485,LOC107377203,LOC103358972,LOC105918555 non-coding downstream 149152 12639537 ~ 12643868 (+)
G234369 NA non-coding downstream 355804 12846189 ~ 12846545 (+)
G234372 NA non-coding downstream 394270 12884655 ~ 12885170 (+)
G234401 NA non-coding downstream 461197 12951582 ~ 12951976 (+)
LOC120554058 obsl1,LOC102777652 other upstream 103113 12358027 ~ 12369221 (+)
LOC120554357 NA other upstream 115157 12299632 ~ 12357177 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other upstream 319894 11852389 ~ 12152440 (+)
G234095 NA other upstream 1076988 11393664 ~ 11395346 (+)
G234085 mest other upstream 1092231 11362541 ~ 11380103 (+)
LOC120554049 ect2l other downstream 296256 12786641 ~ 12797654 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other downstream 512578 13002963 ~ 13025520 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other downstream 678985 13169370 ~ 13202812 (+)
G234651 NA other downstream 1625474 14115859 ~ 14144870 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 2316142 14806527 ~ 14910075 (+)

Expression


Co-expression Network