LOC120554057 (LOC103358968,LOC105923069)


Basic Information

Item Value
gene id LOC120554057
gene name LOC103358968,LOC105923069
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12449724 ~ 12468465 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792654.1
TCTTCTCTGCTCTGTGGCTGACAGAGTGAGTGGCGGAGGAAGGTTGCAATTTAAAAAGACACTTGGATTGACTGTTTTCATTGCACATTGCAACCATGGGACTGGGAAGAGGGAAAGACGAGTACAAACTGGCGGCAACCACAGATGGTGGGCACAAGAAAGACAAGAAATCTCAAGGAAAGAAGGATATGGACGATTTGAAGAAAGAAGTTGACCTGGATGACCACAAGTTAACCTTGGATGAACTTCACAGAAAATATGGAACTGACCTGACCAGGGGTCTTTCCAACAGCAGAGCAAAAGACATCCTGGCCCGAGATGGCCCAAACGCCCTCACGCCTCCTCCCACAACGCCTGAATGGGTCAAGTTCTGTAAACAGCTGTTTGGTGGTTTCTCCATGCTGCTGTGGATTGGTGCGATCCTCTGCTTCTTCGCTTTCACTATCCAGACTATAACCGAAGATGAAGCAGCCAATGATAATTTGTACCTGGGTGTGGTGCTTTCCTCTGTCGTCATCATCAGTGCATGCTTTTCCTACTACCAAGAGGCCAAGAGCTCCAGGATCATGGACTCCTTTAAAAAAATGGTCCCACAGCAAGCCCTGGTCATCCGTGAAGGCGAGAAGAAGATGATCAACGCTGAGGAGGTGGTGGTCGGAGATTTGGTGGAGGTGAAAGCTGGAGACAGGATCCCCGCTGATGTGAGAGTCGTCTCTGCTCACGGCTGCAAGGTGGACAACTCCTCTCTGACTGGTGAATCCGAGCCTCAGACTCGTACTCCCGACTTCTCCAACGACAACCCTTTGGAAACCAGGAACATTGCTTTCTTCTCCACCAACTGTGTTGAAGGTACTGCCAGAGGAGTCGTCATCAACACCGGAGACCGTACCGTCATGGGTCGTATCGCCTGCCTGGTTTCCAGTCTGGAGGGCGGCCAAACTCCCATCTCCATCGAGATAGCACACTTTATCAACATCATCACCGGCGTGGCCATCATCCTGGGTGTTACCTTCTGTGTCCTCTCACTCGTCCTTGGGTATGGCTGGCTGGAAGCCATCATCTTCCTCATCGGTATCATTGTGGCCAACGTGCCAGAAGGTCTACTGCCTACTGTCACTGTGTGTCTGACCCTGACCGCTAAGCGTATGGCGAAGAAGAACTGCCTGGTGAAGAACTTGGAAGCTGTCGAGACCCTGGGCTCCACCTCCACCATCTGCTCCGACAAGACCGGCACCCTGACCCAGAACAGGATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCTCGAGGCCGACACCACAGAGAACCAGAGTGGGGCCTCCTTTGACAGGAGCTCTGCGACCTGGGCTGCCCTGGCCAGAATCGCCGGACTCTGCAACCGTGCCGTCTTCCTGGCAGAGCAGACCACCGTACCCATCATGAAGAGGGATGTAGCTGGTGATGCCTCAGAAGCTGCCTTGCTGAAGTGTATTGAGCTGTGCTGTGGATCCGTTCGCGGCATGAGAGACAAATACCCCAATATTGCTGAGATCCCCTTCAACTCCACCAACAAATACCAGCTCTCCATTCACAAGAATTCAACTCCTGGAGAGACCAAGCACCTGCTGGTGATGAAAGGTGCCCCAGAGAGGATTTTGGACCGCTGCTCCACCATCATGATGAACGGCAAGGAGCAGCCTCTGGACGAAGAGATGAAAGATGCTTTCCAGAATGCCTACGTTGAGCTGGGAGGACTTGGAGAGAGAGTTCTGGGTTTCTGCCATTTCAACCTGCCTGATGACCAGTTCCCAAAGGGCTTTGATTTTGACGCTGATGAGGTGAACTTCCCCACTGAAAACCTGTGCTTCGTCGGCCTCATGTCCATGATCGACCCTCCTCGTGCCGCTGTGCCTGATGCTGTCAGCAAATGCAGGAGTGCTGGAATCAAGGTTATCATGGTTACAGGTGACCATCCCATCACAGCCAAGGCTATTGCTAAAGGTGTGGGTATCATCTCTGAAGGCAACGAGACAATTGAAGACATTGCTGCCCGCTTGAATGTGCCAGTCTCAGAAGTCGACCCCAGGGATGCCAAGGCCTGCGTTATCCACGGGGGTGAGCTGAAAGACATGAGCTCAGAGATGCTTGACGATGTGCTGAAACACCACACTGAAATCGTCTTCGCCAGAACCTCCCCTCAGCAGAAACTTATCATTGTGGAAGGTTGCCAGAGACAGGGAGCCATTGTGGCTGTGACAGGTGATGGTGTGAACGACTCTCCAGCTCTGAAGAAGGCCGACATTGGTGTCGCCATGGGGATCGCTGGATCTGACGTCTCCAAGCAGGCCGCTGACATGATCCTGCTCGACGACAACTTTGCCTCCATTGTTACTGGAGTGGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATCGCCTACACTCTGACCAGTAAAATCCCTGAGATGTCACCCTTCCTCTTCTTCGTCCTCGTCGACATCCCTCTGGCCCTGGGAACCGTCACCATCCTCTGTATTGACCTGGGAACTGACTTGGTCCCTGCCATCTCCCTGGCTTATGAAGAAGCTGAGAGTGACATCATGAAGAGACAGCCCAGAGACCCCAAAACCGACAAactggtgaatgaaaggctcatCAGCATGGCCTATGGACAGATCGGTATGATGCAGGCCGTGGCTGGCTTCTTCACATACTTTGTGATCCTGTCTGAAAATGGTTTCTTCCCCTTGTCACTGCCTGGGATCAGAATGCTTTGGGACGACAAAGATTTTAATGACATGGAAGACAGCTATGGACAGCAGTGGACATACGAGAGCAGAAAGGTCCTAGAGTTCACATGTCACACAGGTTACTTCGCCAGTATTGTGGTGGTCCAGGTGGCCGATCTGATCATCTGTAAGACCAGGAGGAACTCCATCCTGCAACAAGGAATGAAGAACCGTGTCCTCATCTTTGGTCTATTTGAGGAGGTAGCTCTGGCTGTCTTCCTGTCATATTGCCCAGGCACAGACCTTGCCCTCAGAATGTATCCTCTCAAGTTTGGTTGGTGGTTCTGTGCTGTCCCCTATGCCGTCATCCTCTTCTTTTACGATGAAGGCAGAAGATATATCCTCAGACGCTACCCAGGCGGTTGGGTGGAAAAGGAGACATACTACTGACACAACAAGATACAAGTTATTTACTGTCATGTTACATATTTGTCTGAGATTTTACTCAGACCCAAAAGACACAAAGCATGGATGAATAAATATAGATGTATTGATATCAATGTATTGATCTATATGtcattcataataaaacattttctgtaCCGTTGTAAA

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792654.1 True 3329 mRNA 0.51 23 12449724 12468465

Neighbor

gene id symbol gene type direction distance location
LOC120554055 LOC103358968 coding upstream 8039 12415040 ~ 12441685 (+)
LOC120554148 map2,LOC106530705,LOC103139183,LOC106940425,LOC106914874,LOC103389551,LOC103357963,LOC102289154 coding upstream 165092 12218113 ~ 12284632 (+)
acadl acadl coding upstream 232842 12210994 ~ 12216882 (+)
mylz3 LOC101075868,LOC104929359 coding upstream 241130 12205100 ~ 12208594 (+)
lancl1 lancl1 coding upstream 248342 12189498 ~ 12201382 (+)
LOC120554056 LOC103358968,LOC105923069 coding downstream 3869 12472334 ~ 12490385 (+)
LOC120554054 LOC100692262,LOC101156309 coding downstream 26297 12494762 ~ 12522233 (+)
ccdc28a ccdc28a coding downstream 311059 12779524 ~ 12784322 (+)
si:dkeyp-34c12.1 NA coding downstream 424622 12893087 ~ 12896442 (+)
LOC120554719 LOC104966735,LOC102306959,LOC103389234,LOC102212482 coding downstream 452678 12921143 ~ 12941389 (+)
G234301 obsl1,LOC100691457,LOC102777652 non-coding upstream 72762 12376687 ~ 12376962 (+)
G234300 obsl1 non-coding upstream 73447 12375342 ~ 12376277 (+)
G234299 obsl1 non-coding upstream 74501 12374950 ~ 12375223 (+)
G234298 obsl1,LOC100691457,LOC102777652 non-coding upstream 75664 12373786 ~ 12374060 (+)
G234297 obsl1,LOC102777652,LOC100691457 non-coding upstream 76032 12373423 ~ 12373692 (+)
LOC120554062 NA non-coding downstream 57438 12525903 ~ 12658477 (+)
G234353 LOC104946485,LOC107377203,LOC103358972,LOC105918555 non-coding downstream 171072 12639537 ~ 12643868 (+)
G234369 NA non-coding downstream 377724 12846189 ~ 12846545 (+)
G234372 NA non-coding downstream 416190 12884655 ~ 12885170 (+)
G234401 NA non-coding downstream 483117 12951582 ~ 12951976 (+)
LOC120554058 obsl1,LOC102777652 other upstream 80503 12358027 ~ 12369221 (+)
LOC120554357 NA other upstream 92547 12299632 ~ 12357177 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other upstream 297284 11852389 ~ 12152440 (+)
G234095 NA other upstream 1054378 11393664 ~ 11395346 (+)
G234085 mest other upstream 1069621 11362541 ~ 11380103 (+)
LOC120554049 ect2l other downstream 318176 12786641 ~ 12797654 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other downstream 534498 13002963 ~ 13025520 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other downstream 700905 13169370 ~ 13202812 (+)
G234651 NA other downstream 1647394 14115859 ~ 14144870 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 2338062 14806527 ~ 14910075 (+)

Expression


Co-expression Network