atg3 (atg3)


Basic Information

Item Value
gene id atg3
gene name atg3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14400865 ~ 14419991 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792672.1
TCGTGAGATTCGGATACCGGAAGTGTTTACACGTATCATGTGATTTGCTCTTGTTGGCACTGTGCTTGAGTAGCTATAATTATATTTTTCACGTTACGGTTTTGAAGTACCTTGGGTTTTATCTAAAGGGAACTCTACAAGATGCAGAACGTGATAAACACAGTAAAAGGGACAGCTCTCGGAGTGGCTGAGTTTCTCACTCCAGTGTTGAAGGAATCGAAATTCAAAGAGACTGGAGTCATTACACCAGAAGAGttTGTAGCAGCTGGAGATCACATGGTTCATCATTGCCCCACATGGAAATGGGCTACTGGAGAAGAAGTCAAGGTGAAGCCATATTTGCCCCAGGATAAACAGTTTCTCCTGACACGCAATGTTCCCTGTTACAAACGTTGTAAACAGATGGAGTATTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGACGGAGATGGGGGCTGGGTGGACACTTACCACAACTCAGCAGGTGTGTTAGGAGTTACAGATGCTGTACAAGAAATTTCACTGGACAATATAAAGGACAAAAATATGAATGCCACATCGGCAGCATgttgtggtgatgatgatgataatgataatgaagatgatgaagaaggAGAAGCAGCAGATATGGAAGAGTACGAGGAGAGTGGCCTGTTGGAAACAGATGAGGCGACCTTGGATACCAGTAAAATGGTTGAAACCAAAGCCAAAGCAGAGCCTGGTAGTGAAGATGCCATCCTTCAGACTAGAACATATGACCTGTACATCACATATGATAAATACTACCAGACCCCTCGACTTTGGCTGTTTGGATATGATGAAGATAGGCAACCGCTGACTGTAGAACAGATGTATGAGGACATCAGCCAGGACCATGTGAAGAAGACAGTCACCATTGAGAACCACCCCCACCTTCCCCCACCTGCCATGTGCTCTGTCCACCCCTGCAGACATGCTGAAGTGATGAAAAAGATCATTGAGACGGTGGCAGAAGGGGGTGGAGAGCTGGGAGTGCATATGTATCTTCTGATTTTCCTCAAGTTTGTCCAGGCTGTCATTCCCACAATAGAATACGACTACACAAGACACTTCACCATGTAGTTTCATAAATCTGCCTCTCTTAATGCAACATGGGAAAGATCAGCTCTTCTGCCTCTGTGATCAGATTATATCTGGTCTGGTCTGATTAAAACCAGTTTGTGGAGTGTTTGTATTACTCTGAGACACTTTGCGTGGGCGCAGGACATTGGGGAATGTTGGAGGTATGTGGCTAAACTGTtctaacattttgggaaacagaCTTGTTTTCCATGAAACCCAGAGTCAGATAAGAAGACCAATGTCTGTTTTATCTGTGTGCATTCAGTACAGatacatgtgtgttttttataaCTGTTGCTAGCCTAGCTATGGCATGAAAAGTGCAACTTTCATTAAAGTCAGAGCTGTCTTATTTTCATGTATCGTTTAATTTCACCTGTTGAAaaatagaaatgtgaaaaaacagGCTTGGATATATTGGAAGTAGCTTGCTatctaacatgttttttttttacttttgacaaAACTGGCTAGTAGTTTCTTTTTTACTTCCAGTCTTTCTGCTAACCTAGGCCAACCACGTCCTGGACACCTCTGTACTGGATACACAAAAATTAAACTGATGTCCTTATTATCTGACTCTGGGTAAGGCTGCAGACAAGGTTTCATCCCAAAGTTGGACAGTACATCTGATGTTTCTCTACAGGTTTAATGTTGTGACCACAATGTGGCGAGCTCTCATAAATTCCTTGTTAAGCTTTTGCTGATGTTACTAAAAATTCACCCCATTCCACACTGCTTTGCTGCTTGAAATGTAAGAGtctatttcagaaaataaattaACCATGGTCATGCAAAGGGTCAGCTTCTTGAGTTATTAAAAATGAGACGGGTTACAGTAGAACAAGCTGGTTTAGCAGATATTAtttactgaaaacagctgcctgccaTTGCTGGAAACCAGGTTGATGAGAACAGTGAAACTCAacaacagtaaagttgtggtccataaaaccaaaacaatgagcatGCCCTGTTCTACACTGTGGACCTTTACTGACTTTTGTTATCTGTTTATGTATAGTACATCATTTTCCTGTACCACTACAAATAATATTCAGAAGAAAATATTTCAAATCTGTGGATTTGGACTTGGACAACTATCGGTAGGAAATGTATGTGTTCTTGCTAACATCACTGTCTAAAATGTCTCTGTACCTAACAGCAGCATTGATTGAAGTTTCTTGACTATTAACATTACTGTTCCCATGCCTTACTGCAGTGATTATTATTGCTCCCATTCTGATGCACTTTGTAGAAGGCATGGCTGAACCTCATTATTGCAAATCAGCTCTGTATGCCAGTTTGTCTTAATACTTCATTCTCTGAATGTATGGATGGCCAGGCCTTTTCTTTAACCCATGATTCTTGTGGTTGGCTCATATGGTTTTTGTGTTTTACTTAAACTGGACAATTTCCCCCCTGTAGCTTGTCAAAATCTTGAGACGGATTGACTTGTTTCTACAAGCATGGTGTATCACTACCTACTGTGTGTAAGAGCTGTGTGAAGGTTGGCTCTATCTATTGTGTGGCATTTTCACAAAACAAATGaattattttattgtcacaagCCTCTTTGTGTACTTCAATAAACTATTCAATGAA
>XM_039792673.1
TCGTGAGATTCGGATACCGGAAGTGTTTACACGTATCATGTGATTTGCTCTTGTTGGCACTGTGCTTGAGTAGCTATAATTATATTTTTCACGTTACGGTTTTGAAGTACCTTGGGTTTTATCTAAAGGGAACTCTACAAGATGCAGAACGTGATAAACACAGTAAAAGGGACAGCTCTCGGAGTGGCTGAGTTTCTCACTCCAGTGTTGAAGGAATCGAAATTCAAAGAGACTGGAGTCATTACACCAGAAGAGttTGTAGCAGCTGGAGATCACATGGTTCATCATTGCCCCACATGGAAATGGGCTACTGGAGAAGAAGTCAAGGTGAAGCCATATTTGCCCCAGGATAAACAGTTTCTCCTGACACGCAATGTTCCCTGTTACAAACGTTGTAAACAGATGGAGTATTCAGATGAGCTGGAAGCCATCATAGAGGAGGATGACGGAGATGGGGGCTGGGTGGACACTTACCACAACTCAGGTGTGTTAGGAGTTACAGATGCTGTACAAGAAATTTCACTGGACAATATAAAGGACAAAAATATGAATGCCACATCGGCAGCATgttgtggtgatgatgatgataatgataatgaagatgatgaagaaggAGAAGCAGCAGATATGGAAGAGTACGAGGAGAGTGGCCTGTTGGAAACAGATGAGGCGACCTTGGATACCAGTAAAATGGTTGAAACCAAAGCCAAAGCAGAGCCTGGTAGTGAAGATGCCATCCTTCAGACTAGAACATATGACCTGTACATCACATATGATAAATACTACCAGACCCCTCGACTTTGGCTGTTTGGATATGATGAAGATAGGCAACCGCTGACTGTAGAACAGATGTATGAGGACATCAGCCAGGACCATGTGAAGAAGACAGTCACCATTGAGAACCACCCCCACCTTCCCCCACCTGCCATGTGCTCTGTCCACCCCTGCAGACATGCTGAAGTGATGAAAAAGATCATTGAGACGGTGGCAGAAGGGGGTGGAGAGCTGGGAGTGCATATGTATCTTCTGATTTTCCTCAAGTTTGTCCAGGCTGTCATTCCCACAATAGAATACGACTACACAAGACACTTCACCATGTAGTTTCATAAATCTGCCTCTCTTAATGCAACATGGGAAAGATCAGCTCTTCTGCCTCTGTGATCAGATTATATCTGGTCTGGTCTGATTAAAACCAGTTTGTGGAGTGTTTGTATTACTCTGAGACACTTTGCGTGGGCGCAGGACATTGGGGAATGTTGGAGGTATGTGGCTAAACTGTtctaacattttgggaaacagaCTTGTTTTCCATGAAACCCAGAGTCAGATAAGAAGACCAATGTCTGTTTTATCTGTGTGCATTCAGTACAGatacatgtgtgttttttataaCTGTTGCTAGCCTAGCTATGGCATGAAAAGTGCAACTTTCATTAAAGTCAGAGCTGTCTTATTTTCATGTATCGTTTAATTTCACCTGTTGAAaaatagaaatgtgaaaaaacagGCTTGGATATATTGGAAGTAGCTTGCTatctaacatgttttttttttacttttgacaaAACTGGCTAGTAGTTTCTTTTTTACTTCCAGTCTTTCTGCTAACCTAGGCCAACCACGTCCTGGACACCTCTGTACTGGATACACAAAAATTAAACTGATGTCCTTATTATCTGACTCTGGGTAAGGCTGCAGACAAGGTTTCATCCCAAAGTTGGACAGTACATCTGATGTTTCTCTACAGGTTTAATGTTGTGACCACAATGTGGCGAGCTCTCATAAATTCCTTGTTAAGCTTTTGCTGATGTTACTAAAAATTCACCCCATTCCACACTGCTTTGCTGCTTGAAATGTAAGAGtctatttcagaaaataaattaACCATGGTCATGCAAAGGGTCAGCTTCTTGAGTTATTAAAAATGAGACGGGTTACAGTAGAACAAGCTGGTTTAGCAGATATTAtttactgaaaacagctgcctgccaTTGCTGGAAACCAGGTTGATGAGAACAGTGAAACTCAacaacagtaaagttgtggtccataaaaccaaaacaatgagcatGCCCTGTTCTACACTGTGGACCTTTACTGACTTTTGTTATCTGTTTATGTATAGTACATCATTTTCCTGTACCACTACAAATAATATTCAGAAGAAAATATTTCAAATCTGTGGATTTGGACTTGGACAACTATCGGTAGGAAATGTATGTGTTCTTGCTAACATCACTGTCTAAAATGTCTCTGTACCTAACAGCAGCATTGATTGAAGTTTCTTGACTATTAACATTACTGTTCCCATGCCTTACTGCAGTGATTATTATTGCTCCCATTCTGATGCACTTTGTAGAAGGCATGGCTGAACCTCATTATTGCAAATCAGCTCTGTATGCCAGTTTGTCTTAATACTTCATTCTCTGAATGTATGGATGGCCAGGCCTTTTCTTTAACCCATGATTCTTGTGGTTGGCTCATATGGTTTTTGTGTTTTACTTAAACTGGACAATTTCCCCCCTGTAGCTTGTCAAAATCTTGAGACGGATTGACTTGTTTCTACAAGCATGGTGTATCACTACCTACTGTGTGTAAGAGCTGTGTGAAGGTTGGCTCTATCTATTGTGTGGCATTTTCACAAAACAAATGaattattttattgtcacaagCCTCTTTGTGTACTTCAATAAACTATTCAATGAA

Function

symbol description
atg3 Predicted to enable Atg12 transferase activity and Atg8 ligase activity. Predicted to be involved in autophagosome assembly; autophagy of nucleus; and mitochondrion organization. Predicted to act upstream of or within autophagy and protein transport. Predicted to be located in cytoplasm. Predicted to be part of cytoplasmic ubiquitin ligase complex. Predicted to be active in cytosol. Is expressed in brain; liver; muscle; and yolk syncytial layer. Orthologous to human ATG3 (autophagy related 3).

NR:

description
PREDICTED: ubiquitin-like-conjugating enzyme ATG3 isoform X1

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K08343 ATG3; ubiquitin-like-conjugating enzyme ATG3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792672.1 True 2709 mRNA 0.41 12 14400865 14419991
XM_039792673.1 False 2706 mRNA 0.41 12 14400865 14419991

Neighbor

gene id symbol gene type direction distance location
slc19a2 slc19a2 coding downstream 1495 14356830 ~ 14399370 (-)
LOC120554388 NA coding downstream 101175 14290673 ~ 14299690 (-)
gtf3c3 gtf3c3 coding downstream 313383 14010265 ~ 14087482 (-)
hecw2b hecw2 coding downstream 392442 13797432 ~ 14008423 (-)
LOC120554288 NA coding downstream 419495 13980051 ~ 13981370 (-)
LOC120554074 ddrgk1 coding upstream 14317 14434308 ~ 14446096 (-)
LOC120554302 ube3a coding upstream 125749 14545740 ~ 14569910 (-)
LOC120554575 NA coding upstream 181164 14601155 ~ 14614899 (-)
chrm4a LOC104937647,LOC103355860,LOC100699420 coding upstream 458567 14878558 ~ 14924344 (-)
gucy1b2 LOC103355875 coding upstream 515729 14935720 ~ 14963971 (-)
G234752 NA non-coding downstream 44465 14356095 ~ 14356400 (-)
G234736 NA non-coding downstream 103488 14297080 ~ 14297377 (-)
G234676 NA non-coding downstream 210627 14190031 ~ 14190238 (-)
G234675 NA non-coding downstream 211464 14189095 ~ 14189401 (-)
G234673 NA non-coding downstream 219840 14180705 ~ 14181025 (-)
LOC120554079 NA non-coding upstream 57435 14477426 ~ 14484029 (-)
G234802 NA non-coding upstream 117850 14537841 ~ 14542320 (-)
G234828 NA non-coding upstream 179145 14599136 ~ 14600286 (-)
G234896 LOC103355859,LOC104964875 non-coding upstream 386641 14806632 ~ 14828409 (-)
G234927 NA non-coding upstream 666959 15086950 ~ 15087401 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 110822 14194312 ~ 14290043 (-)
G234405 NA other downstream 1446740 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 2107722 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 2862544 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 2911388 11458937 ~ 11489477 (-)
G234898 NA other upstream 427843 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 546325 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 1828703 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 1906102 16326093 ~ 16352877 (-)
G235387 NA other upstream 2191992 16611983 ~ 16616316 (-)

Expression


Co-expression Network