LOC120554074 (ddrgk1)


Basic Information

Item Value
gene id LOC120554074
gene name ddrgk1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14434308 ~ 14446096 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792674.1
GGAATTCTGCAATAAGAAGAAGAATCACGTGACCTCGGGGCCTCCACAGTCTAGCTACTTTATTGTAGTGAGGTGGACACTAATATAGATTtagtaaaattatattttagaaACAGCTATGGATATAACGTTGTACCTTATAGCTGCTGCCATCCTCAGTGTCCTGATTTTGTTTGCGTTCAAGTTGCGgaggaaaacacaggaaaTTGATGAGGAGCAGCGGAGGGATGTTGTCCAGGCAGTGGGGCCCCCTCAGCGGGCAGCCGAGGAGCGAGGTGCCGGTATGCCTCGCAGGAGGAGGAACCTCGCAGCAGTGATGGCTAACAGAAGAccacagagagaagctgtggaACAGGAGGAGGATCAtgtggaggaagaagagggggaGCAGCAGAACTTTCAGCCGACCGCGAAAGTTGGAGCCAAGAAGCAGAAGAAGCTGGAGGAGAAACAGGCCAAGAAAGTTCAGAGAGAGgctgagatggaggagagggaggagaggaaaaggatGCAAGAGctcagagagcaggagagacgtcaggatgaagagagagaacGACACCTGGAGCAGAAACAGgaggaggaggagcgtcACGCTAAAGAGGAGCAAGAAAGacgagaggaggaggagtactTAAGACTTAGAGCCTCCTTCATCATAGAAGACCAGGGAGAAGAGGAGCAGCTCACTGAGGACCAGTCACGCAACCTGCTGCAAGAATTCATACAGTACATTGAGAGCTCGAAGGTGGTTCTCCTGGAGGACTTGGCTTCTCATTTTGGGATGAGGACACAGGATGCTATTTCCAGACTGCAGGACCTGTTAGCTGAAGGGTCCCTCACAGGAGTGATTGATGACAGAGGGAAGTTTATCTCCATCACTCCAGAAGAGCTGAACTCAGTGGCTCATTTcatgagacagagaggcagagtgtCCATCACAGAGCTGGCTCAGGCCAGTAACTCTCTGATCAACCTAATGCCAGAGAGCCGCAGCACCGCCTGATGGACACCTTACTGGTGCAGGACACCTGGAAGACAGTTTTCTTGAGACTGCTGAGGGATATTACAATCTGTGTGAAGATTGCGCTCACGCTGGCAAAGTATATTCTGGACTGTTCATCTGCTATAAGCTGGTGTTTGGTGCCCGGTGTTTTTATTTCAGGCTCAGTAGGTGTCAGACTTAATATAAATTCGGACTTGTTAGATTTACCTTAAAGTTGAAATTAACAGTAACTGCTGTGTATGACATGAAATTAGCAATtccattaacattaacaatttTAACATTGTGAAAATTAAGAAATACAGTTTGAGATTCATACTTTCGtcatatgttttttgtttgggcCTGTTTACTGTGACATGACTTCATGACAATTGCATCATATAAGGGCTGTGAGAGGATAAGATGTACCAATTAAACATAACTTCTCACCTAACATGCCATTGAGATATCCAAAACCTATATCTTTAAATCCATCTGAGTTGATCTATGTTAGACGAGATGCAGAGTATGCTGCTATAGTAGATCTCTGCATCTTGCCACACAAGggaagcggaaggtgacggacatccggccgaaaagagtcatctggcagaatttccggcagcaccggaacaattatggaagtggaacatcgtggatatagactagtttgAACAAATGTCATTTTTGCAAGGATTTATATGTAGCACAAATTACTTTGCTGTACTGAGTGTAAAGAAATATCAGACCGATGTCTAATCTGACTGTGGGtaatatttccccaaatgtcATAACTGCTCCATGAATACACTTTAAATGGGTAGTAGCATTATAGTCCTGTAGGATCAGCACAGGACCTGATGTGGGACTACTATTTAAAGAGTAGAGGACAACACACATTGTGCCTTCTGTGTTCTACTCACTTGTATCATGCATACTAACATCTGCACCATAAAAACTAATAAACATAAATGTATTAAACCGGTTAAA
>XM_039792675.1
GGAATTCTGCAATAAGAAGAAGAATCACGTGACCTCGGGGCCTCCACAGTCTAGCTACTTTATTGTAGTGAGGTGGACACTAATATAGATTtagtaaaattatattttagaaACAGCTATGGATATAACGTTGTACCTTATAGCTGCTGCCATCCTCAGTGTCCTGATTTTGTTTGCGTTCAAGTTGCGgaggaaaacacaggaaaTTGATGAGGAGCAGCGGAGGGATGTTGTCCAGGCAGTGGGGCCCCCTCAGCGGGCAGCCGAGGAGCGAGGTGCCGGTATGCCTCGCAGGAGGAGGAACCTCGCAGCAGTGATGGCTAACAGAAGAccacagagagaagctgtggaACAGGAGGAGGATCAtgtggaggaagaagagggggaGCAGCAGAACTTTCAGCCGACCGCGAAAGTTGGAGCCAAGAAGCAGAAGAAGCTGGAGGAGAAACAGGCCAAGAAAGTTCAGAGAGAGgctgagatggaggagagggaggagaggaaaaggatGCAAGAGctcagagagcaggagagacgtcaggatgaagagagagaacGACACCTGGAGCAGAAACAGgaggaggaggagcgtcACGCTAAAGAGGAGCAAGAAAGacgagaggaggaggagtactTAAGACTTAGAGCCTCCTTCATCATAGAAGACCAGGGAGAAGAGGAGCAGCTCACTGAGGACCAGTCACGCAACCTGCTGCAAGAATTCATACAGTACATTGAGAGCTCGAAGGTGGTTCTCCTGGAGGACTTGGCTTCTCATTTTGGGATGAGGACACAGGATGCTATTTCCAGACTGCAGGACCTGTTAGCTGAAGGGTCCCTCACAGGAGTGATTGATGACAGAGGGAAGTTTATCTCCATCACTCCAGAAGAGCTGAACTCAGTGGCTCATTTcatgagacagagaggcagagtgtCCATCACAGAGCTGGCTCAGGCCAGTAACTCTCTGATCAACCTAATGCCAGAGAGCCGCAGCACCGCCTGATGGACACCTTACTGGTGCAGGACACCTGGAAGACAGTTTTCTTGATTGCGCTCACGCTGGCAAAGTATATTCTGGACTGTTCATCTGCTATAAGCTGGTGTTTGGTGCCCGGTGTTTTTATTTCAGGCTCAGTAGGTGTCAGACTTAATATAAATTCGGACTTGTTAGATTTACCTTAAAGTTGAAATTAACAGTAACTGCTGTGTATGACATGAAATTAGCAATtccattaacattaacaatttTAACATTGTGAAAATTAAGAAATACAGTTTGAGATTCATACTTTCGtcatatgttttttgtttgggcCTGTTTACTGTGACATGACTTCATGACAATTGCATCATATAAGGGCTGTGAGAGGATAAGATGTACCAATTAAACATAACTTCTCACCTAACATGCCATTGAGATATCCAAAACCTATATCTTTAAATCCATCTGAGTTGATCTATGTTAGACGAGATGCAGAGTATGCTGCTATAGTAGATCTCTGCATCTTGCCACACAAGggaagcggaaggtgacggacatccggccgaaaagagtcatctggcagaatttccggcagcaccggaacaattatggaagtggaacatcgtggatatagactagtttgAACAAATGTCATTTTTGCAAGGATTTATATGTAGCACAAATTACTTTGCTGTACTGAGTGTAAAGAAATATCAGACCGATGTCTAATCTGACTGTGGGtaatatttccccaaatgtcATAACTGCTCCATGAATACACTTTAAATGGGTAGTAGCATTATAGTCCTGTAGGATCAGCACAGGACCTGATGTGGGACTACTATTTAAAGAGTAGAGGACAACACACATTGTGCCTTCTGTGTTCTACTCACTTGTATCATGCATACTAACATCTGCACCATAAAAACTAATAAACATAAATGTATTAAACCGGTTAAA

Function

symbol description
ddrgk1 Acts upstream of or within cartilage development. Predicted to be located in endoplasmic reticulum membrane. Orthologous to human DDRGK1 (DDRGK domain containing 1).

NR:

description
PREDICTED: DDRGK domain-containing protein 1

GO: NA

KEGG:

id description
K23344 DDRGK1; DDRGK domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792674.1 True 1978 mRNA 0.45 8 14434308 14446096
XM_039792675.1 False 1945 mRNA 0.45 9 14434308 14446096

Neighbor

gene id symbol gene type direction distance location
atg3 atg3 coding downstream 14317 14400865 ~ 14419991 (-)
slc19a2 slc19a2 coding downstream 34938 14356830 ~ 14399370 (-)
LOC120554388 NA coding downstream 134618 14290673 ~ 14299690 (-)
gtf3c3 gtf3c3 coding downstream 346826 14010265 ~ 14087482 (-)
hecw2b hecw2 coding downstream 425885 13797432 ~ 14008423 (-)
LOC120554302 ube3a coding upstream 99644 14545740 ~ 14569910 (-)
LOC120554575 NA coding upstream 155059 14601155 ~ 14614899 (-)
chrm4a LOC104937647,LOC103355860,LOC100699420 coding upstream 432462 14878558 ~ 14924344 (-)
gucy1b2 LOC103355875 coding upstream 489624 14935720 ~ 14963971 (-)
trnar-ccg_4 NA coding upstream 516265 14962361 ~ 14962433 (-)
G234752 NA non-coding downstream 77908 14356095 ~ 14356400 (-)
G234736 NA non-coding downstream 136931 14297080 ~ 14297377 (-)
G234676 NA non-coding downstream 244070 14190031 ~ 14190238 (-)
G234675 NA non-coding downstream 244907 14189095 ~ 14189401 (-)
G234673 NA non-coding downstream 253283 14180705 ~ 14181025 (-)
LOC120554079 NA non-coding upstream 31330 14477426 ~ 14484029 (-)
G234802 NA non-coding upstream 91745 14537841 ~ 14542320 (-)
G234828 NA non-coding upstream 153040 14599136 ~ 14600286 (-)
G234896 LOC103355859,LOC104964875 non-coding upstream 360536 14806632 ~ 14828409 (-)
G234927 NA non-coding upstream 640854 15086950 ~ 15087401 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 144265 14194312 ~ 14290043 (-)
G234405 NA other downstream 1480183 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 2141165 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 2895987 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 2944831 11458937 ~ 11489477 (-)
G234898 NA other upstream 401738 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 520220 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 1802598 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 1879997 16326093 ~ 16352877 (-)
G235387 NA other upstream 2165887 16611983 ~ 16616316 (-)

Expression


Co-expression Network