LOC120554078 (LOC105905688,LOC102213723,LOC102296852)


Basic Information

Item Value
gene id LOC120554078
gene name LOC105905688,LOC102213723,LOC102296852
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14484168 ~ 14486243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792677.1
CCTGCCAGGCATCTACAATCAAGCACAGTACTTCAACCCCGGCCCAACAGATCATCTCTGCTGAATCGTTGCCTCCGCTTCACTGaGTTCACTTCCATACTCTCCAGATCCAGTCAGCTGGCCTCCCCATTCAGTCCTCCTCCCGTGGCACCCTGCCTCACCCTGCCTCTGCCTCCACGTTCCAGCCAGTCCTCCCTCAGCCCCTCTGTTCCCCCGCTCCAGTGTCTCCTCCGTGGATCTTCAGCCCCGGGCCCGTATCCCTAAAGAATTTTTATGCAAAAAGTGTCTCCTAGCGGCCAAATTCTAAGAAAATTCTCAGAGGCATGACGTTTTCTTAGAATTTCCCCTAAAAGTGACACGAAAATCCCAGTTAATATAAAAGCTATTCCTCAAGAGTCCTAGCGCTTAAAAGGGCTCCTAAGGCGAGATCTGCTAAGAGCAGGGAAGAGGACTTTTAGTGGCTTAGGAGTTCCCCTAAGCAGCTGCACAAAATGGCCAACAGAGGAGGCAGGAGAGATGTCCTGCAAACACTGGATGACAGGGAATTATTGAGACGCTACAGATTGGATCGTGCAGGAATCATGTTTGTGGTGGATCTCCTTAGAGATGCAATTACTTCACCAACTCAACGCCACAACGCTATTACACCGGAGAAGAAAGTAATCATAACCCTGAGGTATTTGGCAACAGggaaaatgcaacaatgcagcAGTGATGACTTGGGTCTGTCCCAATCCTCCGTCAGCAGAGTCATCACCCAAACACTGACAGCTTTGTCACAACCTAATATTGTGACACAATTTGTTTCATTCCTGCTGGATGCCCgcactttacacacacataaaagggCATTTATGGACATTGCAGGATTCCCTGGCGTTGTGGGTGTAATTGATGGAACACGTGAGAATAATTGCGCCATCAGAGGACGAGGCTGTCTTTGTTAACAGGAAGAATTTCCACAGCATCAATGTGCAAATGGTGTTCAATGCGGCCTGTAAGATTTTGGACATTGTGGCTAAATGGCCAGTCTCCACACATGATGCGAGAATGCTCTCCGAGAGTGCCATCAGACAGCTTTTTGAGAGACGCTATGTGCCAGCTAATTGCCACTTGTTAGGGGACAGTGGCTACCCATGCAAACCATGGCTCCTTACACCTTACCTCCAGCCACGCCAAGGGCCCCAACTAAACTATAACAGGGCCCACAAGACAACAAGAGCGGTGGTGGAGCGTGGCATAGGCCAGCTTAAGAGGCGCTTTCATGTTCTCCACGGAGAGGTGCGGCTGAGGcctgaaaaagtcagcaaagTCATCATAGCCTGTGCAATATTACACAATATTTGCAAGGTTAGACAGATTGCAGAACCTCTGGAGGATGGCGATGAGGATGAAGACAACGATGAGGATGGTGGTGAAGAAGATACACATTCCACAGGGGAACCTAGCCCAGAGTGGACTGCCTTACAGGGCAAACTTcacaaatttacatttcagGGATGCTGACGGAGCAGGTGCTGCGGATGGGAATGGTGTTTGATCCGCCGGGCTATCCTgagtagcagctgcagatggttCAGGCGGCAATCTTGTCGGCAAACTTGATGGGCCCGGTTCTTGTGATGGCTCCACGCTACAGAAAT

Function

NR:

description
PREDICTED: putative nuclease HARBI1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792677.1 True 1643 mRNA 0.50 4 14484168 14486243

Neighbor

gene id symbol gene type direction distance location
cars2 cars2 coding upstream 49552 14420009 ~ 14434616 (+)
arl6ip6 NA coding upstream 158347 14305969 ~ 14325821 (+)
dmd dmd,LOC101067548 coding upstream 797564 13216211 ~ 13686604 (+)
LOC120554796 NA coding upstream 1338950 13052363 ~ 13145218 (+)
LOC120554176 NA coding upstream 1479365 12996051 ~ 13004803 (+)
atp1b1b LOC104936446,LOC103355854,LOC103389586 coding downstream 13041 14499284 ~ 14508412 (+)
LOC120554303 LOC107101608,LOC103355870,LOC103477065,LOC106935410,LOC107832892,LOC106932269 coding downstream 45547 14531790 ~ 14544618 (+)
ddx4 NA coding downstream 84883 14571126 ~ 14586743 (+)
ccdc14 NA coding downstream 102819 14589062 ~ 14598938 (+)
LOC120554576 hsf2bp coding downstream 128814 14615057 ~ 14636819 (+)
G234777 NA non-coding upstream 10485 14473448 ~ 14473683 (+)
LOC120554077 NA non-coding upstream 22417 14448891 ~ 14461751 (+)
G234763 NA non-coding upstream 37906 14438958 ~ 14446262 (+)
G234721 NA non-coding upstream 127490 14356076 ~ 14356678 (+)
G234720 NA non-coding upstream 130518 14353419 ~ 14353650 (+)
G234838 NA non-coding downstream 159359 14645602 ~ 14646219 (+)
G234841 NA non-coding downstream 161881 14648124 ~ 14649049 (+)
G234869 NA non-coding downstream 380062 14866305 ~ 14887613 (+)
G234895 NA non-coding downstream 517386 15003629 ~ 15013712 (+)
G234908 NA non-coding downstream 533989 15020232 ~ 15020564 (+)
G234651 NA other upstream 339298 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 1281356 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 1458648 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 1686514 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 2114947 12358027 ~ 12369221 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 320284 14806527 ~ 14910075 (+)
LOC120554227 NA other downstream 542595 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 1902454 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 2270322 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 2274115 16760358 ~ 16760430 (+)

Expression


Co-expression Network