LOC120554119


Basic Information

Item Value
gene id LOC120554119
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10967135 ~ 10989049 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792739.1
GGATTGTCCAGTGTAGAGCCCGGCTTGGGGATGCGCGTCTTTTCCAGGAAATGGCCACCAATGATACCAGAGTTGCGACCGGGCTTTTCATAAATGCTGATCATGTCGTTGGACAGGAAGTAGGACAGGATGAAACGTCGGAGTCGACACCGCCCCCGATTGCTCCCGCCCACTTTACAGGTGTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGATGTTCTGCAGGTCACATGGCAGAAACTTTTACCTGATGGGGAGAAGAATCTAGCTACTTACAGCAACAAATTTGGTAAATCAGTGAATCCTGACTTTAGAAACAACGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGTCATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCTCTGTTTGTTTAACATCTACCCTGAAGGTGCTCTCACTGCTATAACCTGCCTCCTACTCTATGAGCTGCATGAAGCCATTCTCCATGTTGGAGAATCCAACTCTCCTGAAGAGGCAGTAGTGTCCTGCTCGGCCACAGGTCGACCTGCTCCCACAGTTACACTGACTGTCCCTCACCACAACTCTTCCAGTGTCACCAACACCAACGGTACAGTCACTGTCACCACTACAGCTGTGCTGCCTCgtctccatggcaacagcaCACGGGTTGGATGTGCAGTGCGAGTGCTCTCTAGTCCTCAGATAGAGGTGTTCACCATGATTCCTGAGATCAGACAGCCGTCTGCTGATGgttttgATGAGGAATCTGAAACTAATAATAGTGATCGCAGTAGGACTTGGATCATATTGCCTGTGGTATTGGtagcctgtgtttgtgttgttgctgctgtcatCATCACTGCCATCATGCTTagacaaaaaaatcacaacagTCTGTCACACAGGGAGGTGGATGAGATGTCTCCAACTGCAATCCATGATACTATTAATCTGTCACACAGGGACTCTGAGGAGAACAAGACGGACAACACAAGCATCCAAGAACCTGATGAGGTCCATACGTGTGTAGTCACGCAGGACAATCAGATCAGAAAACGGACACCTCCTGAGAAAAGTCCGACAAGTGACAAGCCAGAGCCGTCACCTTCAATACTGGCCTCATCAACAAAGGCCCGGGACCCCCCTCTTACCCCCACTGGCACTGACTCTGTCCTCATCCACATCTGATGTCATGCGATACACTAACGCAATGAACTTTATACTTATTTATTAACATATGTGGTTATTGAGTTTTACCACTATGTCTAATTATCTCATTTTAGatgacatgtttttatttcctaTTGACAATTCTTTACTTCGCACATCTGAGttagtttttttgttaataaaacaGTTTTTATAAAAAGTTTGTGTGATGAAGGGGGTTTTACTGGCATTCACATGTTATTGTTGCCCTGGATTTATAATCTCTCTATCCATCTAGATCATATTATTTCACAGGCAGGGTGTAAGTATATTAATAGGCTACTCCTTAAACTGTTGGCTATACCTAGGcttgttattaataataatgatattaaTTTATGCAGGTGAGATGTTGTCTATATGCcgacacagaaaaaaagttcAAACACCACAAAACATCTCAAA
>XM_039792740.1
CTCAGTTTCAGTTTCGGGAAAGTTTGGACTAGAGCGTTGGCATTGAAAGACTGCGCAGTTTAGATTATAGCCTATAAGATATAGCCTAGTGTTTCTGTAGGCATACTTATTTGTAAGTTCCTAGAATTGCGTGCAACTACCAAACCATACACACACCTTTATTCCAATAAAACACCTAAAAGGAACATCTTGTCTGCATTCTGATCGATGCCCCATCGTGGCCACAACCTTTTAAAGTCCTTCCCAGTCAACAAAACTTGGGCGGTAAATTTGAATTAAAGACCAGCCAAAAATATGTCCTTCCCAGTCACCAAAACTTGGGCGGTAGATTTGAATTAGACCCGATGGCGCTCCGTGCAGTCCTTCAATTCCTTTGTGCGTTGGGAGTCTTTCACAAAGGTGTAACCTCTCTGATAGAAACCCAGCAGACTGTGATGGCAGCAGTGGGAGAAGAGGCTCAGTTAAACTGTCAGCTGATGCAATCTAAAGATGTTCTGCAGGTCACATGGCAGAAACTTTTACCTGATGGGGAGAAGAATCTAGCTACTTACAGCAACAAATTTGGTAAATCAGTGAATCCTGACTTTAGAAACAACGTGGAGTTTAAATGTGCTGGACTACAGAACAGCTCCATAGTCATCAGGAAGGTGACGGAGCAGGATGAAGGATGCTATCTCTGTTTGTTTAACATCTACCCTGAAGGTGCTCTCACTGCTATAACCTGCCTCCTACTCTATGAGCTGCATGAAGCCATTCTCCATGTTGGAGAATCCAACTCTCCTGAAGAGGCAGTAGTGTCCTGCTCGGCCACAGGTCGACCTGCTCCCACAGTTACACTGACTGTCCCTCACCACAACTCTTCCAGTGTCACCAACACCAACGGTACAGTCACTGTCACCACTACAGCTGTGCTGCCTCgtctccatggcaacagcaCACGGGTTGGATGTGCAGTGCGAGTGCTCTCTAGTCCTCAGATAGAGGTGTTCACCATGATTCCTGAGATCAGACAGCCGTCTGCTGATGgttttgATGAGGAATCTGAAACTAATAATAGTGATCGCAGTAGGACTTGGATCATATTGCCTGTGGTATTGGtagcctgtgtttgtgttgttgctgctgtcatCATCACTGCCATCATGCTTagacaaaaaaatcacaacagTCTGTCACACAGGGAGGTGGATGAGATGTCTCCAACTGCAATCCATGATACTATTAATCTGTCACACAGGGACTCTGAGGAGAACAAGACGGACAACACAAGCATCCAAGAACCTGATGAGGTCCATACGTGTGTAGTCACGCAGGACAATCAGATCAGAAAACGGACACCTCCTGAGAAAAGTCCGACAAGTGACAAGCCAGAGCCGTCACCTTCAATACTGGCCTCATCAACAAAGGCCCGGGACCCCCCTCTTACCCCCACTGGCACTGACTCTGTCCTCATCCACATCTGATGTCATGCGATACACTAACGCAATGAACTTTATACTTATTTATTAACATATGTGGTTATTGAGTTTTACCACTATGTCTAATTATCTCATTTTAGatgacatgtttttatttcctaTTGACAATTCTTTACTTCGCACATCTGAGttagtttttttgttaataaaacaGTTTTTATAAAAAGTTTGTGTGATGAAGGGGGTTTTACTGGCATTCACATGTTATTGTTGCCCTGGATTTATAATCTCTCTATCCATCTAGATCATATTATTTCACAGGCAGGGTGTAAGTATATTAATAGGCTACTCCTTAAACTGTTGGCTATACCTAGGcttgttattaataataatgatattaaTTTATGCAGGTGAGATGTTGTCTATATGCcgacacagaaaaaaagttcAAACACCACAAAACATCTCAA

Function

GO: NA

KEGG:

id description
K06556 CD200; CD200 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792739.1 False 1670 mRNA 0.45 9 10967135 10989049
XM_039792740.1 True 1888 mRNA 0.43 10 10967136 10988847

Neighbor

gene id symbol gene type direction distance location
LOC120554115 NA coding downstream 19633 10931280 ~ 10947502 (-)
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding downstream 67475 10885752 ~ 10899660 (-)
LOC120554104 NA coding downstream 99632 10854723 ~ 10867503 (-)
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding downstream 181282 10784874 ~ 10785853 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding downstream 184607 10780954 ~ 10782528 (-)
LOC120554120 NA coding upstream 1500 10990549 ~ 10995360 (-)
LOC120554123 NA coding upstream 22183 11011232 ~ 11013638 (-)
LOC120554124 NA coding upstream 24946 11013995 ~ 11018662 (-)
LOC120554122 NA coding upstream 31784 11020833 ~ 11029361 (-)
LOC120554129 LOC103361269,LOC104942788,LOC103151927 coding upstream 106467 11095516 ~ 11101153 (-)
LOC120554121 NA non-coding downstream 8845 10957910 ~ 10958290 (-)
G233939 NA non-coding downstream 43319 10915974 ~ 10923816 (-)
LOC120554109 NA non-coding downstream 118780 10837792 ~ 10848355 (-)
G233918 NA non-coding downstream 136005 10829346 ~ 10831130 (-)
LOC120554110 NA non-coding downstream 136875 10824907 ~ 10830260 (-)
G234024 NA non-coding upstream 52137 11041186 ~ 11094182 (-)
G234026 NA non-coding upstream 71762 11060811 ~ 11083168 (-)
G234032 NA non-coding upstream 162793 11151842 ~ 11152551 (-)
G234051 NA non-coding upstream 295743 11284792 ~ 11285090 (-)
G234063 NA non-coding upstream 316562 11305611 ~ 11306703 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 442050 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 579202 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 694276 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 790325 10152861 ~ 10176810 (-)
G233644 NA other downstream 924729 9965692 ~ 10042406 (-)
LOC120554127 NA other upstream 48306 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 147578 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 399503 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 469888 11458937 ~ 11489477 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other upstream 535333 11524382 ~ 11538321 (-)

Expression


Co-expression Network