LOC120554129 (LOC103361269,LOC104942788,LOC103151927)


Basic Information

Item Value
gene id LOC120554129
gene name LOC103361269,LOC104942788,LOC103151927
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11095516 ~ 11101153 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792756.1
GCGCATGATGAGGAGGCGTGACACACTCCCCGGGTCATGTGAGCGTCATCAGCGGCTCCAGCCAGGGCCAGAGAGCAGCGCGCAGCGGGGACACCAGCGCCATGTCACCGGCTGACAGCAGCACCCTGCCCGGGATGGAGGAGGGGGATTTAAACGCAGAAGCCAGGCTGTGACCCGACACACACCGACAGGTGGAGCTGCTTTATCTATCGTTGGTGTCTCCAAACCTCCCGTGCGGTCGCTTGGCGCGGACTTGGTGTGAAACCAAGATTGTCCTGAGCCGGCTCACTGCAGCCATGATATCCAAGTCGGCCCTGCTGAAGGTGATCCTTCTGGGTGACGGCGGCGTCGGCAAGTCGTCCCTCATGAACCGCTACGTCACCAACAAGTTTGACTCGCACCTCTTCCACACCATCGGCGTGGAGTTCCTCAACAAAGAGCTGGACGTGGACGGCCACCACGCCACTCTGCAGATCTGGGACACGGCGGGTCAGGAGCGTTTCCGCAGCCTCCGCACGCCTTTCTACCGCGGCTCCGACTGCTGCCTGCTCACCTTCAGCGTGGACGACGGACAGAGCTTCCGAAACCTTGCCAACTGGAAGAAGGAGTTCGCTTATTACGCCGACGTGAAGGACCCTGACAACTTCCCCTTTGTGGTGCTGGGCAACAAACTGGACGTGCCCGAGCGGCAGGTGTCGGGAGAGGATGCGCGGCAGTGGTGCCGCGAGAACGGCGGTCACCCGTACTTTGAGACAAGTGCCAAGGATGCTACAAATGTAGCGTCGGCCTTTGAGGAGGCGGTACGGCGCATTCTGGCGTTGGACGACAGAGCTGACCACCTCATTCACAACAACACAGTGGACCTGCAGAGGAAGAATCACCCTGACCCCAGCTGTTGCTGAGTTCAGCAGGACTTCATGTGACTCTGCACAAAGAGGAACTGGTGTTTGCTCAGTTTctgttgtactgtatgtgatacCCTCAGATAAACTTGGGACCAGGATCCGCATTTGGAAGCAAATACCGATATTCTTATGGaccaaaaactgaacattttgtGCCAATATTCAGCATTTTTCACCACACCAGAGACAAAACCTCTCCACCCACCATTTCCCAACTCTGGGTCGTGTTTTATAGATTTATTTGTGGTCAGTGATGAACCTCAATTGTGTCAGAGGTGGACATAACTGGCTCATACCGGAATTTTAAAGGGCCTATAGGGAGTGATTGTGACTTGAGCCGGGTTTCTGTGATAAAAGCTGAACTATCACCTCTAAAATGCAAGCAGTTctctaaacttaaaaaaaagaaagaaatagctTTGACGTCACTGATGGAGCTGTGGCTGCAAGTTTTAGCCCACAAAAAGAGAAGTCCAGAGATCACTGTCTGCCTCTAGAAACAGACACAACCACATTTACAGCTAAAATATATGGCGACATAGTCCTGATTGTTCTTAAACGACCCAGTAACCTATACTCCCAAAATGATTTTCAGGTCTTTTGATAAACAAACTGCCATTAGAAAACCGATAACACATGACtaaaacatgtcatatttgCAGTTATAAACCAACATTCTAATTTCCCATCTAGGCTACAACTCAAACTCTTGACATACCGCATTgcaagtaattaaaaagtatgTGGTTAATCAAATTCTAGACAGGAACCACTGTCTTTGTGGTAAGTAAATTAATGAATGAGATTggagcctctttttttttctttttttcccccagattATTATAGAGTTAATCACTAGATTCAATAGTTGATTTAATCATCTTTTCCAGATACAATATCTGCTGTTCTGTTAGGATGATTttaaatatgttgttgttttgaaaATCCAGGCTTTATGATGGAATTTAGTGTTTCCCTAAGGAAGAGCATAAGCTACTTGTAGTTATTGCTGGAGTTATAATATCCTGTTTTGAAGTATGTACTGATCACTACCCCTCCTCTCACTATGAAAAGTGGAGCACACTGCTGAATCTTAAAATGTTAGATACGATTAAAATGACTCTATGTAACACTGTGGCCTATGTAATCTTTATTAGCAATGCCTTCTTCAGGGCAAATGGCTCCCATCACCaacattctttttttacacTGGGAATAAAACAACAGCCAGCAATTAAACTGGAGAAAAATCtg
>XM_039792757.1
GATTAATCACAATGTAGCCTAATCCGTAGTGTCTATTTTCTGATAGGCTTACGATTGTATTTACACAACATAACAGACTATCTTGTGTGAGTAATGCATGACGTGTGTTTAATCAATCCTTTGGTAAATAATGGTTGTATAGCCTATACTGGCAGGAGGGGCAATGTCTTACACTGGGAAGTGGCAGTTCAGCAGTTGGAGGACAGTGAACGTTGCGTCTGTAGGAACATGGTGTAGAGGGGAGACTCTATATTCGCGTTATTCAGAAACTATCTTTTCTCAGCTGTGATAGGGCTTCGGGCCTCATCAATGACGTCATTGGTCCAAAACGATACAAGCCTCgatatagcatatatatatataaaaggtcGGAGAACTTGGTGGATTACAGTTGGCACACGCCCCAAAGCCTCGATCGACACAGCACGTAGAACATCCCTAACAAGTGGAGCTGCTTTATCTATCGTTGGTGTCTCCAAACCTCCCGTGCGGTCGCTTGGCGCGGACTTGGTGTGAAACCAAGATTGTCCTGAGCCGGCTCACTGCAGCCATGATATCCAAGTCGGCCCTGCTGAAGGTGATCCTTCTGGGTGACGGCGGCGTCGGCAAGTCGTCCCTCATGAACCGCTACGTCACCAACAAGTTTGACTCGCACCTCTTCCACACCATCGGCGTGGAGTTCCTCAACAAAGAGCTGGACGTGGACGGCCACCACGCCACTCTGCAGATCTGGGACACGGCGGGTCAGGAGCGTTTCCGCAGCCTCCGCACGCCTTTCTACCGCGGCTCCGACTGCTGCCTGCTCACCTTCAGCGTGGACGACGGACAGAGCTTCCGAAACCTTGCCAACTGGAAGAAGGAGTTCGCTTATTACGCCGACGTGAAGGACCCTGACAACTTCCCCTTTGTGGTGCTGGGCAACAAACTGGACGTGCCCGAGCGGCAGGTGTCGGGAGAGGATGCGCGGCAGTGGTGCCGCGAGAACGGCGGTCACCCGTACTTTGAGACAAGTGCCAAGGATGCTACAAATGTAGCGTCGGCCTTTGAGGAGGCGGTACGGCGCATTCTGGCGTTGGACGACAGAGCTGACCACCTCATTCACAACAACACAGTGGACCTGCAGAGGAAGAATCACCCTGACCCCAGCTGTTGCTGAGTTCAGCAGGACTTCATGTGACTCTGCACAAAGAGGAACTGGTGTTTGCTCAGTTTctgttgtactgtatgtgatacCCTCAGATAAACTTGGGACCAGGATCCGCATTTGGAAGCAAATACCGATATTCTTATGGaccaaaaactgaacattttgtGCCAATATTCAGCATTTTTCACCACACCAGAGACAAAACCTCTCCACCCACCATTTCCCAACTCTGGGTCGTGTTTTATAGATTTATTTGTGGTCAGTGATGAACCTCAATTGTGTCAGAGGTGGACATAACTGGCTCATACCGGAATTTTAAAGGGCCTATAGGGAGTGATTGTGACTTGAGCCGGGTTTCTGTGATAAAAGCTGAACTATCACCTCTAAAATGCAAGCAGTTctctaaacttaaaaaaaagaaagaaatagctTTGACGTCACTGATGGAGCTGTGGCTGCAAGTTTTAGCCCACAAAAAGAGAAGTCCAGAGATCACTGTCTGCCTCTAGAAACAGACACAACCACATTTACAGCTAAAATATATGGCGACATAGTCCTGATTGTTCTTAAACGACCCAGTAACCTATACTCCCAAAATGATTTTCAGGTCTTTTGATAAACAAACTGCCATTAGAAAACCGATAACACATGACtaaaacatgtcatatttgCAGTTATAAACCAACATTCTAATTTCCCATCTAGGCTACAACTCAAACTCTTGACATACCGCATTgcaagtaattaaaaagtatgTGGTTAATCAAATTCTAGACAGGAACCACTGTCTTTGTGGTAAGTAAATTAATGAATGAGATTggagcctctttttttttctttttttcccccagattATTATAGAGTTAATCACTAGATTCAATAGTTGATTTAATCATCTTTTCCAGATACAATATCTGCTGTTCTGTTAGGATGATTttaaatatgttgttgttttgaaaATCCAGGCTTTATGATGGAATTTAGTGTTTCCCTAAGGAAGAGCATAAGCTACTTGTAGTTATTGCTGGAGTTATAATATCCTGTTTTGAAGTATGTACTGATCACTACCCCTCCTCTCACTATGAAAAGTGGAGCACACTGCTGAATCTTAAAATGTTAGATACGATTAAAATGACTCTATGTAACACTGTGGCCTATGTAATCTTTATTAGCAATGCCTTCTTCAGGGCAAATGGCTCCCATCACCaacattctttttttacacTGGGAATAAAACAACAGCCAGCAATTAAACTGGAGAAAAATCtg

Function

NR:

description
PREDICTED: ras-related protein Rab-9A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07899 RAB9A, RAB9; Ras-related protein Rab-9A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792756.1 False 2162 mRNA 0.47 2 11095516 11101153
XM_039792757.1 True 2416 mRNA 0.45 2 11095516 11100543

Neighbor

gene id symbol gene type direction distance location
LOC120554122 NA coding downstream 66155 11020833 ~ 11029361 (-)
LOC120554124 NA coding downstream 76854 11013995 ~ 11018662 (-)
LOC120554123 NA coding downstream 81878 11011232 ~ 11013638 (-)
LOC120554120 NA coding downstream 100156 10990549 ~ 10995360 (-)
LOC120554119 NA coding downstream 106467 10967135 ~ 10989049 (-)
LOC120554130 NA coding upstream 3214 11104367 ~ 11105832 (-)
LOC120554132 prps2 coding upstream 39384 11140537 ~ 11150651 (-)
LOC120554133 NA coding upstream 53773 11154926 ~ 11220986 (-)
LOC120554135 NA coding upstream 129068 11230221 ~ 11232384 (-)
LOC120554137 NA coding upstream 152493 11253646 ~ 11260652 (-)
G234024 NA non-coding downstream 1334 11041186 ~ 11094182 (-)
G234026 NA non-coding downstream 12348 11060811 ~ 11083168 (-)
LOC120554121 NA non-coding downstream 137226 10957910 ~ 10958290 (-)
G233939 NA non-coding downstream 171700 10915974 ~ 10923816 (-)
LOC120554109 NA non-coding downstream 247161 10837792 ~ 10848355 (-)
G234032 NA non-coding upstream 50689 11151842 ~ 11152551 (-)
G234051 NA non-coding upstream 183639 11284792 ~ 11285090 (-)
G234063 NA non-coding upstream 204458 11305611 ~ 11306703 (-)
G234078 NA non-coding upstream 231128 11332281 ~ 11332560 (-)
G234080 NA non-coding upstream 232214 11333367 ~ 11334089 (-)
LOC120554127 NA other downstream 48557 11037355 ~ 11046959 (-)
G233954 NA other downstream 126406 10948468 ~ 10969110 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 570431 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 707583 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 822657 10271069 ~ 10272859 (-)
LOC120554131 NA other upstream 35474 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 287399 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 357784 11458937 ~ 11489477 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other upstream 423229 11524382 ~ 11538321 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other upstream 1177366 12278519 ~ 12293143 (-)

Expression


Co-expression Network