LOC120554136 (gpbar1)


Basic Information

Item Value
gene id LOC120554136
gene name gpbar1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11248793 ~ 11252073 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792771.1
GCCTATGGATGGATGCATGCAGGGGAACAGGCTCGAAGTTATTTATTCAAAGTTATTAAGTTTTTTATTGAATCTAAAGCATACATGACTGGATTGATCATCCCTAAAAGGGTAGCTGTACCTTGATGGGAGTGGAGCCGGGCTGCAAACGGGGAGGAAGTCTGCAGATTCGGCATACATGATGGACTGGAACTACTCACGTGCTCTGCTCTCTGGGGAGCAGCTCATCTTTGCCATCACCATACCACTGTCGACCGCCATCATCTTGGCCAACCTCGTCATCATCTTGGGCATCGCCTGGAACCGCCAGCTCCACAACACAACCAACTACTTCTTCTTCAGCCTGTTAGTGGCAGATCTGTGCACCGGCGTGGCGCTGCCGTTCATACCATTAATGGGTCTGAACCGGGCGTTGAGTTTTAGCTCCTGCCTGGTGGCTCACGTTTTCCCAAACTTCCTCTTCCTGGCGTTCCTTTTCAACCTGGTAATGGTCCACTATGAGCGCTACATTTGCATCGTCGACCCCCTGTGCTACAACAACCTGTGGATGCATCGCAGATTCCCTCTGGCGTGTCTCGTGGTTTGGGCGCCGCCACTTCTGTACGCATCCCTACCTGCTTTCGGTTGGAATAACTGGACAGGGCCGGATTGGAACGGCTGTTGTGCAAGTAGCCCAAACACAACGCTTCTTTCAAACTGTTCAACGAACAAAACCACGTGCTGCTCGTACAGGCGAGTATTCCCCAACGCCTTTATCTACTTGGAGGTGTATGGGCTCGTCTTACCTGCTATTCTTACCATCGCTGGCATGACTGGCCGCGTTTTATGGATCACCCGAGGCCAGCTGAAAGACATTTGTCGCCTTCATCGATCGGTGGAGCGGGGAAGTCAGGCCTCGGACCGAGAGCAGAGGCTGAACATGCGGTACACTCGCTGCGTGGTGGCGGTGTCGCTGACGTTTCTCGCATGCTGGGTACCCTACCTCATTTACATGCACGCCTGCATAGCGTTCTTGATCAGCGACACCAAGTGGAGCTCCACTACTCACATCGTGCTGTCATGCACTGGCATTGGAAGCATGGCTGTGGTGCCGCTGGTGCTCGGCCTAGCTAACAGGCAGTACACAGAACCGGCATTCAAACTTCTCCAGAAACTCCGAGACAGATGGAGGCGAAGGACGCAGGGATCAGAGGAGGCGCCAGTCTGAGAAAATAACGACGAATATTTATGAAGGTTAATTTGGAAGAAATCATGATGCTCACTTTGATGCCCACAGTAAATTGACCAAGGCCATTGCAGTGATTCTTTCACAATTTAGTTATCaatgttactttaaaaaaaaaagtccatgcATTGTTTTACACTGGGTTTGCAATGATCATTTCTGTATGTAGCTTCCCATTTCTGATGGTTTTCCATGACATTTTCATAATTCAGCGGACAATATTACTGTATAAGGAGATAGAATTGAAAAGATGAAGGAAAGTTAGTACGTGTAGTGACGACATTAAAACCAACCATCGTCTCAAACAAGCACCATTCGTGCTAACGTCAGTGTGCTAACTTGTtcacaatgctaacatgctgatattTCGCTTGTATAATAATACCTATAATGTTAATTGTCATTTTGAGAACATTAGGAAGAAAGGTTATATAAAGTACCCTCGTATCAGTGTTGTACATCCTTTAAATATAACTCAaagacatgtacagtatatcctcACTTCTCTTTGTGCTGCCTGCTCTGGATATCGTAACAGATTGTCCCCCATCTGTCACCCACCTCCCCTGAAATGTTTACTCCTACTTCCCTCACTAGTGTTTATCTATATGCTAGTATGCAAGCTGAAGAGGGGAGAGGGATGCACCCCCCCTGATTCATCTACGAGACATTAGTGCTTCAGCAAGAACATGCAGGAAAGAACTATGAAGGGAAAAACATGTGTGCATGTTAGTTTCTTCCATATTTAGATAAACTGTTTCAGGAAGGTTAAATACTGTAAAAGCAGGCTTCGGAGAAACATCTGCTGCTTCCAAATAACTGTATTTGAAGACTCAAAGATGTATTTGTTGTAAAGTTCCACTCAA

Function

symbol description
gpbar1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GPBAR1 (G protein-coupled bile acid receptor 1).

NR:

description
PREDICTED: G-protein coupled bile acid receptor 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08400 GPBAR1; G protein-coupled bile acid receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792771.1 True 2091 mRNA 0.47 2 11248793 11252073

Neighbor

gene id symbol gene type direction distance location
LOC120554134 aamp coding upstream 5626 11232695 ~ 11243167 (+)
LOC120554128 LOC101077481,LOC103361270,LOC104935061,LOC108246803 coding upstream 157106 11049784 ~ 11091687 (+)
LOC120554118 NA coding upstream 258466 10972258 ~ 10990327 (+)
LOC120554112 NA coding upstream 330450 10906797 ~ 10918343 (+)
LOC120554113 NA coding upstream 342308 10901295 ~ 10906485 (+)
LOC120554138 NA coding downstream 8356 11260429 ~ 11264177 (+)
LOC120554141 NA coding downstream 22932 11275005 ~ 11291114 (+)
slc19a1 slc19a1 coding downstream 41614 11293687 ~ 11304333 (+)
LOC120554145 NA coding downstream 71932 11324005 ~ 11330546 (+)
LOC120554163 NA coding downstream 189737 11441810 ~ 11449836 (+)
G234010 NA non-coding upstream 16287 11230487 ~ 11232506 (+)
G234001 NA non-coding upstream 82769 11160996 ~ 11166024 (+)
G233994 NA non-coding upstream 106977 11121858 ~ 11141816 (+)
G233987 NA non-coding upstream 109514 11095516 ~ 11139279 (+)
G233941 NA non-coding upstream 295815 10947922 ~ 10952978 (+)
G234079 NA non-coding downstream 81205 11333278 ~ 11334092 (+)
G234081 NA non-coding downstream 85293 11337366 ~ 11337625 (+)
G234087 NA non-coding downstream 89907 11341980 ~ 11342290 (+)
G234088 NA non-coding downstream 91093 11343166 ~ 11343416 (+)
LOC120554172 NA non-coding downstream 180597 11432670 ~ 11436202 (+)
gemin8 gemin8 other upstream 199386 11046296 ~ 11049407 (+)
pln NA other upstream 658711 10579826 ~ 10590082 (+)
trnas-cga_10 NA other upstream 859738 10388974 ~ 10389055 (+)
LOC120554323 LOC104929110,LOC103356760,LOC101067516,LOC102314427,LOC102201222,LOC101482517,LOC107381121,LOC106905396,LOC103147142,LOC106529266 other upstream 1429228 9726383 ~ 9819565 (+)
prkag3a prkag3,LOC103372145,LOC104934537 other upstream 1784476 9460752 ~ 9464317 (+)
G234085 mest other downstream 110468 11362541 ~ 11380103 (+)
G234095 NA other downstream 141591 11393664 ~ 11395346 (+)
LOC120554149 erbb4,LOC102292440,LOC101467929,LOC100701577 other downstream 600316 11852389 ~ 12152440 (+)
LOC120554357 NA other downstream 1047559 12299632 ~ 12357177 (+)
LOC120554058 obsl1,LOC102777652 other downstream 1105954 12358027 ~ 12369221 (+)

Expression


Co-expression Network