mtrf1 (mtrf1,LOC104961503)


Basic Information

Item Value
gene id mtrf1
gene name mtrf1,LOC104961503
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12992838 ~ 12995995 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792859.1
TCtgctgcgttccatttacctcggaagtCGGAGGAGTTACTGAACGGTGACCTGCCGGCGCAATGGCAGTTGTTGTGAACACTCGAACAACAGGTGTAGCGTTATATTATTGTTTTACTTCAGTTATTGCTCTCCAAATGTAGTCAAATGCTCGTCAATGGCTGGTCTCGACTGTGCTCTTTGTGTAGCCGTGTAGTCtacagcagcagagggagaagaGCAGGATGGAGGACACTAACAGGACACAGCAGAACACAGGTGCGACATTGGGGTACAGTACAGGTGCGACATTGGGGTACAGTGGCACCAAGACGCCTCTATCACAGGGATCTGGGGGACTTGTACAAGACAGAGTCCGTTCAGAGGTATCTTCAGCAGCTCATGGAGGAGTTCAGAGACCTCAGCAAGAAGTTACAGCACGCATATCTCAGCGAATCTGACAGAAAAGTGCTTAGtaagaaacacacagagctgctgcCTCTGGCAAATGTCTTTGAGGAGATTGAACAAGCCCTAAAAGACCTTGAGGAAGTCCTTTCCTTTCTGCATAGTTCAGCTGCAACCAAAGATGAAGATGACCAGTTGACCCAGCTCTTAAAGGTGGAAGAAGAACAAATCTCCTGCAAGATTTTGGCCTTAAGAAAAGATTTGATCAAAGCTCTTGTGCCCATCGACCCTCTTGACTCCAGTAATATTCTGCTGGAGGTTGTATCAGGACGAACAACAGGAGGTGACATCTGTCAGCAGTTCACCAGAGAAATGTTTGACATGTACCAGGGTTATGCTTCTTACAAGAattgggactttgagcttctgaACTTTACACCTGCTGAGTATgGTGGTCTGCACCATGCAGCAGTAAGACTAGTTGGTGAGAACGTGTACAGACATCTGAAGCATGAAGGAGGAACACACCGGGTGCAACGGATCCCTGAGGTGGGCCTCTCCTCCAGGATGCAGCGTATCCACACCGGAACCATGACCGTCATTATCCTGCCTCAGCCAGCGGAGTTTGAGGTCCACATTGATCCAAAGGATCTTCGCATTGACACGTTCAGATCTCGCGGTGCTGGGGGCCAAAGTGTAAACACAACAGACAGCGCAGTGCGCATTGTTCATCTTCCCACCGGTATAACAGCTGAGTGTCAGCAGACTCGCTCCCAGCTGCAAAACAGAGACACCGCCATGCGTGTGCTGAGGGCCCGGCTCTACCAGAGCATGATGGGCAAAGAGACTGAGCAGAGGCATATGGCACGAAAGCAGCAGGTGGGCACACGTTCTCAGTCCGAGAGGATTCGTACCTACAACTTTAGCCAGGATCGTGTCACAGACCACAGGACTGGATATGTTACTAGAGATATTAAGGAGTTCATGAGAGGAGGGGAGGCTCTTGATGATCTGATCTCTGATGTACTTGAACATGCGGAGAGGGAGGCTCTTTTGGAGGCGGTGGAGAGCAGCAGCGTGAAACCACCAGAGTCTGCACACTGACACCCACCACAACACCACAACAGTCTGTCAAGTGTACTTAACAGACAGCATATCATTTAATGGATGCATCAGGCGTCTTTACAGTACTGTGACAGCGCATCAGGGCAGACACATATATTATTTTCATATTAATTTATGCTTGTGCAAATAAGGCAATGTAAGACAAACTGCAGTTTACCCATCAttaaggattttattttttataataaaatatgaaattataTACCACAATGTCAA

Function

symbol description
mtrf1 Predicted to enable translation release factor activity. Predicted to be involved in mitochondrial translational termination. Predicted to act upstream of or within translational termination. Predicted to be active in mitochondrion. Orthologous to human MTRF1 (mitochondrial translation release factor 1).

NR:

description
peptide chain release factor 1, mitochondrial-like

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K02835 prfA, MTRF1, MRF1; peptide chain release factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792859.1 True 1728 mRNA 0.48 9 12992838 12995995

Neighbor

gene id symbol gene type direction distance location
trnae-uuc_66 NA coding downstream 6950 12985817 ~ 12985888 (-)
gk LOC100693874,LOC101471943 coding downstream 8263 12961875 ~ 12984575 (-)
LOC120554795 NA coding downstream 33275 12954106 ~ 12959563 (-)
LOC120554312 NA coding downstream 38623 12951421 ~ 12954215 (-)
filip1l filip1l,LOC100693076,LOC102798342,LOC102213048 coding downstream 107740 12797844 ~ 12885098 (-)
zgc:65895 tsc22d1,LOC106531085,LOC102196627,LOC106942021,LOC103477739,LOC103130603 coding upstream 25053 13021048 ~ 13048596 (-)
trnad-guc_30 NA coding upstream 60621 13056616 ~ 13056687 (-)
trnag-gcc_27 NA coding upstream 116163 13112158 ~ 13112228 (-)
LOC120554566 NA coding upstream 710255 13706250 ~ 13711834 (-)
hecw2b hecw2 coding upstream 801437 13797432 ~ 14008423 (-)
G234434 NA non-coding downstream 1400 12988373 ~ 12991438 (-)
G234375 NA non-coding downstream 206895 12783991 ~ 12785943 (-)
G234373 NA non-coding downstream 212678 12779586 ~ 12780160 (-)
G234333 NA non-coding downstream 503830 12487905 ~ 12489008 (-)
G234330 NA non-coding downstream 505508 12436996 ~ 12487330 (-)
G234478 NA non-coding upstream 165737 13161732 ~ 13162096 (-)
G234490 NA non-coding upstream 203983 13199978 ~ 13200294 (-)
G234491 NA non-coding upstream 206927 13202922 ~ 13205960 (-)
G234523 NA non-coding upstream 434986 13430981 ~ 13439811 (-)
G234526 dmd non-coding upstream 490972 13486967 ~ 13497867 (-)
G234405 NA other downstream 38713 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 699695 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 1454517 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 1503361 11458937 ~ 11489477 (-)
spega LOC103358966 other downstream 1550912 11388552 ~ 11441926 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other upstream 1198317 14194312 ~ 14290043 (-)
G234898 NA other upstream 1851839 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 1970321 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 3252699 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 3330098 16326093 ~ 16352877 (-)

Expression


Co-expression Network