zgc:65895 (tsc22d1,LOC106531085,LOC102196627,LOC106942021,LOC103477739,LOC103130603)


Basic Information

Item Value
gene id zgc:65895
gene name tsc22d1,LOC106531085,LOC102196627,LOC106942021,LOC103477739,LOC103130603
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 13021048 ~ 13048596 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792867.1
TGcattcctcctccctcctttgaGACGAGACTGACAGCCcgttagctgctgctgctcaccGGCAATGATACAGCAAACACGGACTCTGAAAGACACACCGAGATGGACTTAGCGAGCACTTTTTACCACTACAAAGACGGATATTATTTAGACATCGTTGTCTATTAAGTTTATTTTTCGCCAGGATCATTTTTGTTTCGGGGAAAAAGGAGACTCGACGTGCAAGAGAGGACGTTGACGCGACGACTGAATTCCTGCGACATACACCGGCCAGCTAGAAGCTTTCACGTTCACTTTGAAGACCACCTGAGTAAACCTAAACTATTCCGGGCTGGACTTATTTTAGTGTGTTTAATTGTGACACTAATATCTTCAAAATAATCTTAGTAAGTAGTGAAGAGACAAGTTGTGGAAGAGCGTGTCTAATCGCTACTGGCGACCCAACACAGCTTGAAGCTAACCGACGGCTAGCTGGATTTCacattctttgttttatttatttacttaattGAATACAGTGTTGATGTCTCTCTGAAGTTGGATTAATACTTGTGTTAAGAAGAGTAACACCGCTTATGAGCTAGCTAGCGTTTCGACAACGTAACGACAGCCCGGATCGCTTAGCTTGATTTTTAAAGGACATAAATCACCTGACTTATGGCTCGTTAGTATCGCGGTACTGCAGCTGACCCAGCTAGAAGGTAGAGCCAGCAGCCGTCAGCCACTTCTTGGCCTTTTGCAACTCATCGAAGGTAAATATGCACCACCAGGACTTTACTGGGGACCCGTCTGGGACCGGGAGTAGGAAAACGACTCACCACTACAGGAGAGGTAGCAGCGGCGCGCCTGCCTCCTCCGCAGCCGGTGGCAGTGGAGTCAACACGGCTGACGACAATCCCACCCAGGCTGGATCCAGTTCTCCCGGACTCCACCACCAGCCGCTGTCCCAAGTGTCTGGCGCTCAGGTGAAGAAGAAGAGCGGCTTCCAGATAACAAGTGTCACATCAGCTCAGATCAATGTGAGCGGCAACAACAGTTTAGCAGATGACACCGAGAGCTATGACGATATGGATGAGTCACACACAGAagacctctcctcctctgataTGCTGGATGTTTCCGTGTCCAGGGCCACAGATACAGGTGTGCCGGAGAGAAGCTCTTCAGATGAGACCCTCAACAGTCTCCATGGGGTCGATACACCTGGAATTGTGTCACCCAACGAGCCCCTTCACCATCATTCCATCCCTCAGGGGTCTCAGCAGCACACCTCCATGGTAAATGGGACCATGCAGCATCATTATTATCCTCAGCAACACAGCCAGCCCCACCATCATCACCCTGATAGTTTGGGAGGAGTTGAACCCTCGTTGTCAGCTCTTCCCATTGCTCCCGTGGGTAGCTCCAGCCCGGCTTTGGCTTCCAAAGCCGGGCCTAGCCAGAGGCCACCGATGTTGGAGCCTGCAGGTGGAACAACCCAACCACTAGCCCCTACTGTTGGTGGGACAGCCACTGATCCACATCTACAAGGCAGTGTGAACGTTCCTAATGTGTCAGCTAACACTACTGCTGCTGCAGTTCCTCCTCCTGGGCCTGCAGGTTTTGACAACACTAGTGTGAGTGGACAAGTAGCTTCTGTCGGAGGAGGAACAGGACCGTCTGCTGCTGCCCCCAACACTCAAACCCAGCACACCCAAACTCAGACAGCTACTGGCTCTCGTTTTAGGGTGGTCAAACTAGACACTAACTCCGAGCCATACCGCAAAGGAAGATGGACGTGTACAGAGTATTATGAAAAGGAGGTTCCTCATCCAACGACATCTGAGGCACCAAAAGGCGTGGAGGTGGCTGTAGAGACGGAGGCTGGTAACGCCGGGATTAGTCAGCAGGGCGTACAGCCACCTCACACGCTTCAGCCGCCGAGTCAAGATTTCACTAGTCCACAAACCATGCAGAGCCCGCCACAGGGACTGGCACAAACCACTCCTGTGACCTATGTTTCACCCCAGGAGGTTGTTGGTGGGACCCACGTGCAGCACCCAGCGGCTCCTGTCACTGTCCCTTCTACAGCGACATCACAGGCTGGTGTAAATCCACCTCCCCCTGTAATACCCCAGCAGCTGCCCTATACTGTGGATCCCCACCAGGCTCAACCCCAAGGAGGTTACCAGTTCCATGGAGGGGTCATAGCCCCGGGAAGTGTCCGGCAGCCAGACTTTATCCAGCCTACTGCTCCCTTCCAGACCCAGGTCCAGCCTCCGCTGACGCATGTTACAACAGGAATCTCCGTAACGCCAGTTTCAGGGGTCATGGCACCGCCACCGATCAGCATTCCTCAGCAGCTGCCCCATCAAGGTTCGGTAGCCCCACCTGCCCAGGCAACCTTTGCTGGACAGCCACAGACCCTCCCAACTCAAGCTCACCCACAGCCACAAGTCCAGCCCCTCTCCACTGCTACAGTCCCAGTAGCGCCCACCCATGGGACCCCCTACATGCCTTTGAGTGCACTGCAAGCTGACCTCCAGCCTCTCCTCACCCTGGGTGCCACCTTCACCCAGGTCCCCGGAGGAGGGAGCTCCATAAGAACATCCCAGCTGGAGGATGCCCAGAAGCTCCTGCTCCAGCACCAAGGCCTGCTGGGTCTGCCCAGGCTAGGGGTCGCAGCAGGTGGAGAGGGGTCTGCACAGTCCAGTGGTGCTGCTGGAAGCCTGGCCCACATGGGCATGTCAGCTGAGGCCAGCGCCTTCATGgtcgctgctgctgcaggcctCAGGACTCAGCATGctgaaggagaggaggacagCTCTTCCGGTGCAAGTGTGGTGGCCATCGACAACAAGATTGAACAAGCAATGGACCTGGTGAAGAGCCACCTCATGTACGCCGTGCGCGAGGAGGTGGAGGTGTTGAAGGAGCAGATTAAAGAGCTGATCGAGCGCAACActcagctggagcaggagaacaACCTGCTCAAGAACCTGGCCAGCCCCGAGCAAATGGCTCAGTTTCAGGCACAGACAGAAACTGGCGGCTCCCCGAATGGCGCTGCCCAGCCTCCGGTCGCGGCCGGAACCACACCGGTCCTCCCTTCCACACAGAGCTCCGGCACATCTGCGTAACACAGAAACGGCACACTggagaaccccccccccccagaggaTGAGAAATAGGGGGAAtggaaggaagaagaaaaggaggagataGAAGTTTTGCCATACTGTGAACTGACTCTAACATCAACACACATGCCACCGTCTCAAGGAGGGCACACGTCCGCTGAACCGGAGGacaatttttgttgttgttgcacatTTAGTTGAACTGAAAGACTTTGCAATtgcacggtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtctgcttttaTTACCTGCCTCAGACCATCGTCGTCTTCAATATAGTGTCGATGAGCGGAATGACAGAGCTGACAGGAACCTGACAGTCCGCTGCCATTGGTCAGAGCCACCAGCGGAGGAAGGAGCTAACGCAGGGTCCGGCCAATCGAGTGGGAGTATGCTGCACGCTCTTGTCAGTGCTGTCGAATCCCTTGCTGTGTGACCTGTGGAAATTGTGCCATCATCtttggccccccccccccccacaca
>XM_039792868.1
GGGGTGTTTTCAGTGGGCCGTGTGGCGGGGGCCCTCTGCTTGGTCGGAGAGTGTGTTTTAGCCTGAGAGCGTCAATGAGAGAGAAGGGGCTGGCTGGGGCAGGAGGAGCGCAGGGCAGGGACGCCATGGCGTCAAAGCTGCTCTTCTGGGAGCTGGCCAAGCATCTGAAGAGCTCTTCCGGTGCAAGTGTGGTGGCCATCGACAACAAGATTGAACAAGCAATGGACCTGGTGAAGAGCCACCTCATGTACGCCGTGCGCGAGGAGGTGGAGGTGTTGAAGGAGCAGATTAAAGAGCTGATCGAGCGCAACActcagctggagcaggagaacaACCTGCTCAAGAACCTGGCCAGCCCCGAGCAAATGGCTCAGTTTCAGGCACAGACAGAAACTGGCGGCTCCCCGAATGGCGCTGCCCAGCCTCCGGTCGCGGCCGGAACCACACCGGTCCTCCCTTCCACACAGAGCTCCGGCACATCTGCGTAACACAGAAACGGCACACTggagaaccccccccccccagaggaTGAGAAATAGGGGGAAtggaaggaagaagaaaaggaggagataGAAGTTTTGCCATACTGTGAACTGACTCTAACATCAACACACATGCCACCGTCTCAAGGAGGGCACACGTCCGCTGAACCGGAGGacaatttttgttgttgttgcacatTTAGTTGAACTGAAAGACTTTGCAATtgcacggtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtctgcttttaTTACCTGCCTCAGACCATCGTCGTCTTCAATATAGTGTCGATGAGCGGAATGACAGAGCTGACAGGAACCTGACAGTCCGCTGCCATTGGTCAGAGCCACCAGCGGAGGAAGGAGCTAACGCAGGGTCCGGCCAATCGAGTGGGAGTATGCTGCACGCTCTTGTCAGTGCTGTCGAATCCCTTGCTGTGTGACCTGTGGAAATTGTGCCATCATCtttggccccccccccccccacaca
>XM_039792869.1
AATCCAGAGAGAGGGAGCCGCGGGTGCGCGGAGCTGCAGTCTTTTGTGTGCTCTGTCCCGGCTGCGAGCTCCACGGTCGCCCCGGAGAGCAGACCCCGTCATCCTGTCCTCAATAATGCGCtattttttctacttttatacCACTGGACTTCCAGTTTGCACAGCCGAAGAATCGCCTTCGGGGGTTTTAATGGGCAGGATAGCATGAACTCCCAATGTTATACGGTGGCGATGGATCTTGGCGTTTGTCATCTGAGGAATTTCTCGATATCGTTTCTGTCCTCCGTGCTCGGAAAGGAGAGTGCATCAGTCGGCCTCGACAATAGCTCTTCCGGTGCAAGTGTGGTGGCCATCGACAACAAGATTGAACAAGCAATGGACCTGGTGAAGAGCCACCTCATGTACGCCGTGCGCGAGGAGGTGGAGGTGTTGAAGGAGCAGATTAAAGAGCTGATCGAGCGCAACActcagctggagcaggagaacaACCTGCTCAAGAACCTGGCCAGCCCCGAGCAAATGGCTCAGTTTCAGGCACAGACAGAAACTGGCGGCTCCCCGAATGGCGCTGCCCAGCCTCCGGTCGCGGCCGGAACCACACCGGTCCTCCCTTCCACACAGAGCTCCGGCACATCTGCGTAACACAGAAACGGCACACTggagaaccccccccccccagaggaTGAGAAATAGGGGGAAtggaaggaagaagaaaaggaggagataGAAGTTTTGCCATACTGTGAACTGACTCTAACATCAACACACATGCCACCGTCTCAAGGAGGGCACACGTCCGCTGAACCGGAGGacaatttttgttgttgttgcacatTTAGTTGAACTGAAAGACTTTGCAATtgcacggtgtgtgtgtgtgcgtgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtctgcttttaTTACCTGCCTCAGACCATCGTCGTCTTCAATATAGTGTCGATGAGCGGAATGACAGAGCTGACAGGAACCTGACAGTCCGCTGCCATTGGTCAGAGCCACCAGCGGAGGAAGGAGCTAACGCAGGGTCCGGCCAATCGAGTGGGAGTATGCTGCACGCTCTTGTCAGTGCTGTCGAATCCCTTGCTGTGTGACCTGTGGAAATTGTGCCATCATCtttggccccccccccccccacaca

Function

symbol description
tsc22d1 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in several structures, including forerunner cell group; mucus secreting cell; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to human TSC22D1 (TSC22 domain family member 1).

NR:

description
PREDICTED: TSC22 domain family protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792867.1 True 3642 mRNA 0.54 3 13021048 13048596
XM_039792868.1 False 1011 mRNA 0.57 3 13021048 13029985
XM_039792869.1 False 1165 mRNA 0.55 3 13021048 13025544

Neighbor

gene id symbol gene type direction distance location
mtrf1 mtrf1,LOC104961503 coding downstream 25053 12992838 ~ 12995995 (-)
trnae-uuc_66 NA coding downstream 35160 12985817 ~ 12985888 (-)
gk LOC100693874,LOC101471943 coding downstream 36473 12961875 ~ 12984575 (-)
LOC120554795 NA coding downstream 61485 12954106 ~ 12959563 (-)
LOC120554312 NA coding downstream 66833 12951421 ~ 12954215 (-)
trnad-guc_30 NA coding upstream 8020 13056616 ~ 13056687 (-)
trnag-gcc_27 NA coding upstream 63562 13112158 ~ 13112228 (-)
LOC120554566 NA coding upstream 657654 13706250 ~ 13711834 (-)
hecw2b hecw2 coding upstream 748836 13797432 ~ 14008423 (-)
LOC120554288 NA coding upstream 931455 13980051 ~ 13981370 (-)
G234434 NA non-coding downstream 29610 12988373 ~ 12991438 (-)
G234375 NA non-coding downstream 235105 12783991 ~ 12785943 (-)
G234373 NA non-coding downstream 240888 12779586 ~ 12780160 (-)
G234333 NA non-coding downstream 532040 12487905 ~ 12489008 (-)
G234330 NA non-coding downstream 533718 12436996 ~ 12487330 (-)
G234478 NA non-coding upstream 113136 13161732 ~ 13162096 (-)
G234490 NA non-coding upstream 151382 13199978 ~ 13200294 (-)
G234491 NA non-coding upstream 154326 13202922 ~ 13205960 (-)
G234523 NA non-coding upstream 382385 13430981 ~ 13439811 (-)
G234526 dmd non-coding upstream 438371 13486967 ~ 13497867 (-)
G234405 NA other downstream 66923 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 727905 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 1482727 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 1531571 11458937 ~ 11489477 (-)
spega LOC103358966 other downstream 1579122 11388552 ~ 11441926 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other upstream 1145716 14194312 ~ 14290043 (-)
G234898 NA other upstream 1799238 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 1917720 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 3200098 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 3277497 16326093 ~ 16352877 (-)

Expression


Co-expression Network