LOC120554200 (sh3bp4,LOC103360214)


Basic Information

Item Value
gene id LOC120554200
gene name sh3bp4,LOC103360214
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17775532 ~ 17807753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792931.1
TCCTCCAGAGCTCCGACAGACCGGACCAGAGACACACGGGAAGCGGCGTGTCTGCGCATCTGTCACCGTTACAAACTTCATGGACTGGTCGGAGGGGGGGTGGACGAACGATAATCTTAtttccaccttttctttttaacatctatcctttttttccctttttctttttttggtcttCCAGTCAAATGTCAcgagggaaaagaaaaagaggaaaaagtctCTCCATCGGCTCTTATGTTTCCCCCTATTCTCACTGAGCCGCCACTCCGAGCGTTCGGGCGTCCAGCCAGCAGGAGATGAAAAGCTGCCAATGAGCGATTTCTACGTTGAGCACCAGCCATGGCTGCCCATCGCATCATCAGAGTGACGAACAACAATAACGTCCTTCCTCGCTGCAAGTCTGAGGGGACGCTCATCGACCTTAGCGAAGGGTTCACCGGGGCCAGTCTTAACGATGTCAAAGTGCCTTCTCCCAGTGCCTTAAGGCTGGATACTTCAGCCTCCTATGGAGCTGCGCAGGAAGTGGTTGCCATAAAGGATTATTGCCCCAGCAGCTTCACCACGCTGAAGTTCTCCAAAGGGGATCGCCTCTATGTGTTGGACAcgtcaggtggagagtggtggtaCGCCCACAACAACACGGAAATGGGCTACATCCCAGCCGCCTACGTCCAGCCGGTCAACTTCAGGAACTCTATGCTTAGCGACAGTGGGATGATTGACAGTCTCGGGGAAGGATACGAGGATGGGTCAAAGGAGTTTGGAGGTTTGGGGGAGTGGACAGGGATAACCCTTAAGCCCTCCCCAATTTACAACAACAGTCCCCTCTCTCTGAACCCCTTTATCCATCCGTTAGATCAAAACTGCAAAGATATAGGTGTAAGGAACTCAACAGATCTTATTCTGTTTGATGCACTGGCATCTCCATCATCTTGCTCAAACTTTAACACCAATACAATCATGACCAATGGGTTCAGCAGCTGCCACATTAACAATACCACCCTCACCAGCCCAAATCAAGCGGTTGGACCTAACCTCCACAGGGATAACCCGTTTTTTAGGGGTAAACGCTCCCACAGTCTCTCAGAACTGTCAGTCTTGCAGGCGCAGTCGAATCCAACCTTACCTTCCTCTGGATTCTTCACAGGCCTTAAGGCTCCTTCACCGGAGCAGTTTCAGAGCAGGGAGGACTTCAGGACTGCTTGGTTGAACCACAGAAAGCTAGCCAGGTCTTGCCATGACCTTGACTCCCTGGGTCAGAGTCCTGGGTGGGGCCAGACGCAGCCGGTGGAGACCAACATTGTGTGCAAGTTGGACAGTAACGGAGGAGTTGTTCAGCTCCCGGACACCCAAATCACCATACACATCCCTGAAGGCCACGTCAGCCATGGAGACCACCAACAGATCTCCATGAAAGCGTTACTAGATCCTCCTCTGGAGCTCAACGGTGACCACTGCTCCACTGTTAGCCCCGTGGTGGAGATCAAGCTGAGCAACATGGAGACCAGGTCCTTTATCACGTTGGAGATGAAGGTATTGGTAACCATCAAGAAGGAAAGTTGTCACACGGCAGAGGTGCTTTGCGTTCGAAGTGACTGCAAAGAAGGGCCTTACACACCCATCCCCAATGCTTACATTTACAAGGATACAGTCCAGGTGCAGCTGGATAGTTTAGAGCCTTGTATGTATGTGGCTGTTGTGGTTAAGGCACAGTACATTAGCCACAATACCACTGTTTGGGACCATGTGCAGAGGAAAGTAACGCTGGGTGTCTACGGTCCCAAGCACATTCACCCTTCCTTCAAAACAGTTGTGGCAATGTTTGGGCATGACTGTGCCCCCAATACATTGTTGGTAAATGAGGTGGGCCGGCAGGCTAACTCCACCCCGCCAGTGGCCCTCCAGCTGTGGGGGAAACACCAGTTTGTGCTGGGGTACCCTCAGGACCTCCAGGTGGGATTGTACTCCAACATGTCCAACTATCAGGTGAAGGCGAGCGAGGGTGCCGGGGTGATTCAGGGATTTCAGGTCAAACTGGGGAAAGTCAGCAGGCTCCTGTACATGATCACATCGCGTGACCCCAACAGCATCTCAGATTTTACTCTCAGGGTCCAAGTCAAGGATGCCCTTGACTGTATCCTCACCCAGTTTTGCGTCCAAACGCCATCACCGCCACCAAAGACCGAAGCGAGGATAATGGGCCAGAGGAGGTttctgaaaaagaaagaggTGGATAAGATTGTCCTCTCACCACTGGCTGTCACTTCCAAATACCCAAAGTTTCAGGACCGATGCATTACCATCCTTAAATTTGGCAAGTTGATCAAAACAGTGAATAGGCAGCACAAGAGTACTTATCTGTTGGAGTACAAAAAGGGGGATGTTATTGCTTTGCTCAGCGAGGACAAAATCAAACTGCGAGGGCAGCTGCGGACCAAAGAGTGGTTCATTGGATACTACCTGGGGAAGATAGGCCTTGTCCATGCCAAGAATGTTTTAGTTCTGGGTAAGGTCAAGCCTATTTATTGGTGTGGGCCGGACCTAACAACCACAATGCTGCTGGAGCAGATCCTGAAGCCTTGCAAATTTCTTACGTACATCTACGCAACAGTGAGGACGGTTTTAATGGAGAATGTGGGCAACTGGAGGGCATTTGCAGATGCCCTTGGGTATGGGAATTTGCCACTTAATTGTTTTTGCCGAACCGAACTGGACAATGAGCCGGAGAAGGTGGCGTCGGTTCTGGAGAAACTCAAAGAGGAGTGTACGAACATGGAGAACAAGGAGAGGAAGTCCTTCCAGAGGGAACTCATGATGGCGTTGCTGAAGATGGACTGCCAGGGTCTGGTTGCCAGACTGGTCCTGGATTTCGTCTTGCTGACCACGGCGGTGGAGGTGGCGTTCCGCTGGAGGGAACTGGCCGAGAAACTTGCTCGAGTGTCCAGACAGCAGATGGAGGCCTACGAGGCTCCGCACCGCGACAAGAACGGCCTGTTGGACAATGAGTCCATGTGGAAGCCAGCCTACGATTTCCTCCTGACGTGGGCCGCCCACGTCGGGGACAGCTACCGAGACGTGATCCAGGAGCTCCACCTCGGCCTGGACAAGATGAGGAACCCCATCACCAAGAGGTGGAAGCACCTGACGGGCACGCTAATCCTCGTCAACTGCCTCGATACGCTCCAAAGTGCTGCCTTCTGTCCCACGGGATACGGAGATTTCGCTGTGTGAACACTTTCGTGCACCTGGAGAACACATTCTGTTAAAAGTCTACGAGGGCTGTTGCGGTAACTGGTAGAGACCAGTCCGATACCAGTGTCGGAATAGTCTCCGATACGGTCTAAAATGCCGGTATGGGTATCGGAGAGTAccggagtttatgcaccgatccaataCCACATAGTTtagccctgaagaaaatctactttaaagtagttcatctatgttctttttccgtgaTGACTCActcaagttcaggtatcggaatcggtattgGGAAGGAAAAAATGGAATCGGACCATTTCTAGTTACTGGAGCCCAATACATGTGCAGAGTTTTGTCTTGGACGGTTGGACAAGCTTCTGTACGTCCTCTTGTTTGGAGTCTTGGACGGGCGTCATCGGTGGCAGCACCGATTGGTTTCCGTTAAGCGCCAGATGTACAAATGTTATTGCACGATTCTTGGCATTGAATAAGTCAATGTGAAACTGGAGgatctgcctctctctgtttttatGCCTTTTGTTAGGTTAGTCctgttttctctgtgttttttttttttacctccccCTTGGTCTTCCCTTTTAATTTTGCTCCAATTGatgacagtgtgtgtgaattGTTCTTTCCGTTTCCACATCTCCCTCAGGACAACATCAGAGACCTCGCCCACTGCAGTATACGTGACCACACGTACTGTGAACTTTGACCTGTCCGCCACCTTTAAAAGCTGTTTTTACCCCCCCTTTGTTTGCAAGCTAAATTTTTACACACAACGCAACTTTTCCCTCCATTCTTTCACTGCTTCTCACTGGCCGAAGAAGGCGGAGCTGATGTGttgtttaaatgaaattaatcaaaaaaataGTTTCATACATTCAAAACATTAAGAGCATTTCTCGGTCATGGTAACTTTACGTGTGACTCGCAAGATATACTTCTATTTTTTATACTTGCAGAACGATACAGGCGATGATATTATTGGCAGTGTTATTCTTGTGTACTGTACGCTTCAAGAGTTAGAACTTCAGAATCAAAATTACAACCGTGGTGTAAAATATGTACACTTGAGTTTTTAGCCGAACATCCAAAtctattttcctttttaaagcatGAAATCCTACATTTATTGTACATAAGTGCATCCAATATTTTCAAGATGTTAGACTGTTGCGCACACACGTTTTAATTTTTTCAGGGATTACGTATTTGATGAAGATAGACCTAAAATGATCATGATAATGTTAAAATTCCTGCTAAAGGTGCCAGTACAgcacattttttgcaagtttgcTATTTTTACTTTCTGACTTCTCCAACGCATAaatttcattattttcttgTGGTGCATTTTATTGGAGTGTTTTAACTTTGGGTTTTTTCAACTGCAATGCAATTCTATAGGACAAATGTGCATTGTCGACTTCGTCCACTAAAATTGCTTTATTTCTTGCAGATTAAtattataagtgtctgacaacattatggaaaggatccctacagagatagacctttttttaaagagtaaCATCCTCTTTGTTTAACCAAAAAAagctctgaggtcgctagcgctaaactcaccagactccattttaaaaaacagcacttttagtgtgtatagagccaacatattttc

Function

symbol description
sh3bp4 Predicted to act upstream of or within negative regulation of TOR signaling. Predicted to be located in clathrin-coated pit; clathrin-coated vesicle; and nucleus. Predicted to be active in cytoplasm. Orthologous to human SH3BP4 (SH3 domain binding protein 4).

NR:

description
PREDICTED: SH3 domain-binding protein 4-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792931.1 True 4855 mRNA 0.48 5 17775532 17807753

Neighbor

gene id symbol gene type direction distance location
LOC120554248 LOC103366962 coding upstream 411467 17357447 ~ 17364065 (+)
LOC120554209 NA coding upstream 432503 17340047 ~ 17343029 (+)
LOC120554229 NA coding upstream 468594 17289184 ~ 17306938 (+)
LOC120554211 NA coding upstream 507235 17221309 ~ 17268297 (+)
LOC120553999 NA coding upstream 596719 17169385 ~ 17178813 (+)
LOC120554264 LOC103360215,LOC103389527,LOC101479567,LOC101064475 coding downstream 28141 17835894 ~ 17836902 (+)
LOC120554001 LOC103375332 coding downstream 380897 18188650 ~ 18238425 (+)
orc4 orc4 coding downstream 636426 18444179 ~ 18453002 (+)
zeb2b zeb2,LOC103355929 coding downstream 1216395 19024148 ~ 19127654 (+)
LOC120554051 xdh coding downstream 1705149 19512902 ~ 19522669 (+)
G235609 NA non-coding upstream 30379 17742792 ~ 17745153 (+)
G235619 NA non-coding upstream 42752 17729469 ~ 17732780 (+)
G235614 NA non-coding upstream 48439 17722096 ~ 17727093 (+)
G235589 NA non-coding upstream 233371 17512726 ~ 17542161 (+)
G235587 NA non-coding upstream 265837 17509493 ~ 17509695 (+)
G235625 NA non-coding downstream 7962 17815715 ~ 17828471 (+)
G235630 NA non-coding downstream 29317 17837070 ~ 17838244 (+)
G235703 NA non-coding downstream 83837 17891590 ~ 17902611 (+)
G235699 NA non-coding downstream 131341 17939094 ~ 17940272 (+)
G235707 NA non-coding downstream 135067 17942820 ~ 17943107 (+)
trnat-cgu_25 NA other upstream 823763 16951697 ~ 16951769 (+)
trnat-agu_63 NA other upstream 825038 16950421 ~ 16950494 (+)
LOC120554243 NA other upstream 842926 16880639 ~ 16932606 (+)
trnat-cgu_21 NA other upstream 1012924 16762536 ~ 16762608 (+)
trnat-agu_56 NA other upstream 1013960 16761499 ~ 16761572 (+)
als2b NA other downstream 74712 17882465 ~ 17938311 (+)
LOC120554216 mpp4 other downstream 145386 17953139 ~ 17966226 (+)
G235775 NA other downstream 359533 18167286 ~ 18171954 (+)
G235778 NA other downstream 369072 18176825 ~ 18181812 (+)
anos1a LOC103358938 other downstream 1864119 19671872 ~ 19698895 (+)

Expression


Co-expression Network