LOC120554203 (mfsd6)


Basic Information

Item Value
gene id LOC120554203
gene name mfsd6
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17491167 ~ 17507261 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792937.1
AAGGCGCGTGACTTGACGGTTATGTGTGTGCTAAGGACAGGTGGCAGCCCCGGTTAGGCGAGCTGCTGTTGTTCTCAGCACAAAGAGCAGAGCCGGAGAAACACTTCAAATTCACATTCAATTGGAAAAAACATGAACACGTTACGGTAAATTCAAACATTATccgctaaataaaaaaaaaataatgtttgtgaCGCGTTTTGCGTGAAATGTCCGACAAGGGAGACAAATCCAACAGAAACTGCGCAGTTTAATGGGAGCCGTGACCTGAGCAGATATGCCAGCTGACGACAAGGTTGCCATCCTGACGGACGACGAGGAGGAGCAGAAGAGGAAGTATGTGTTGGCCGAGCCGTTTGACGCGCAGTCGTCGGGTCAGCCGGCAGGTGTTCCCGCGGACACGGCGACGCCAACTGCGGGAACGCCGCCCGAGCAGCTGGAGGCCCCGCGGGCCGCCTCAACGGACTGCTGCGAGGGGATGTGCCTGCGCATCAACAGCCGCCTCCTCATCTCCAAGGTCTTCTACCTCTTCTTCTACGCCGCGTACGGCTCGCTGCACCCGCTGCTGGCCCTGTACTACAAGCAGCTCGGCATGTCGGCCAGCCGCAGCGGGCTGCTCGTCGGCATTCGCTACTTCATCGAGTTCTGCAGCGCCCCCTTCTGGGGCGTGGTGGCCGACCGCTTCAAGAAGGGCAAGATGGTGCTGCTGTTTTCCGTCCTGTGCTGGCTGGTGTTCAACTGTGGCATCGGCTTTGTCAAACCGGCGGAGATGATGTGCGTGGTGGTAGGCGCCGACCTTCCTCCGACAGCGGCGGCGCCGCACCCGACAACTACTCTCCCGCACGGCAACTTCACCACACAGACGGGCAACTCCACCAACCGCACCAGAAGTCGCCGGAGCTTTCTAGAGCTCACCGGGCTTCCGGACATCCTGGACTCTCATTTCGGCGCGCTCCGCCGGCCAAAGCGAAGCGCAAACCTCAACGCCACTTCCGCTCCCTTGGAGCCAGCCAGCACTACCCAGCTGGCACCGAACAACACcctccccaccaccaccaccaccgcgACCCCCCCGGCTCCGACCAAAGCCAAGAAGCACCAGATTGTCTACAACAAGGACCAGGTGGAGAGCATCTTCCTGCTCATCCTGCTCGTTGTCATCGTCGGCGAGTTCTTTAGCGCGCCGGCCGTCACCATCGTGGACACCGTCACCCTGCAGTACCTCGGCAGGGCGCGCGACCGCTACGGCTTGCAGAGGATGTGGGGCTCGCTGGGCTGGGGTCTGGCCATGCTGCTGGTGGGCATCTGGATCGACCACACGCACGTGACCGTTGTGATCGACGGCGTGGGCTGCGTCGTGCCCGACTTCCGTCTCCACAATTACCAGATCGCCTTCATTGTCTTCGGCGTGCTGATGGGCGCCGCGTTCATCGTCGCCACTCAGTTTTACTTTGATAACGGCGGCGACTACAGGCAGGAGCTTCCGGAGGGGGTGGCCGAGGACGGGAGCAGCCCAAGAGCGTCGCCCGAGTCAGAGTCCGACTCCTCGGGCCGGACGCCCGTCAGCCCGGACGCCGCCCAGGATTTCCGCTACAGCGATCTGCTGAAGCTGCTCTGCAGCGTGCGCTACAGCTCGGTGCTGTTCGTCGCCTGGTTCATGGGCTTCGGGTACGGCTTCGTCTTCACCTTCCTGTACTGGCACCTGGAGGACCTGCACGGGACCACTACGCTGTTCGGGGTCTGCTCGGTCCTGAGCCACATCTCGGAGCTCGTCGCCTACTTCACCAGCCACAAGTTCATCGAGCTGGTCGGACACGTCAGGGTTCTGTACATCGGCCTGGCCTGCAACACAGCTCGCTACCTGTACATCTCCTACCTGAAGAACGCCTGGACCGTCCTGCCCATGGAGGTCCTCCAAGGTGTGACTCACGCCTCAGTTTGGGCTGCCTGTATCTCCTATCTGAGTGCCGCGGTCCCGCCGGCCCTGAGGACATCGGCGCAGGGCATCCTGCAGGGCCTCCACCTCGGCCTGGGCCGCGGCTGCGGAGCCATGGTGGGGGGAGTGTTTGTCAACTACTTTGGTGCTGCAGACACGTTCCGAGGAATCGGCATGGCCTCCCTCGTCATCCTCCTAATCTTCTCCTTCATCCAGTGTCTGTttggagagacagaggagaaagAGGACAGAATGCTGGCCGAGAACATCCCGGTTCCCTCCAGCCCGGTTCCCATCGCTACCATCGACCTGGTGCAGAGCCAGACCGTCCCCGGGAGCCCCACCTCGGCACGCCTGGCCGCCCCGCTGCCCATCATTAAGACCAAACaccaggaggagcaggaggacgTGAGCAGACCCGCCTGGGTGCTCTCAGGCGCCCCCTGGGTCACCATCGCCTTCGCTATCGTCCAGATCAAGGAGATGATGAACATGGTGAAGAGCCGCGCGCCGCCCACAGAGACTCAGCCCCTGCAGgTACCTAATGAGCAGGCGTCGGCCGAGTACAAGGCGGTGGCGACGTCACACAGAAACCCCGGTGATGACGGCACGGAAGCGCCCACGCAAATAAATGCcgcccgtccagcgcccacagACTCTAACGAGGACAAAGACCAAACACGCCCGTCCTCAGACGGTGGGGAAGACAACCCAGCCTTCccagctgaaaacacacactgactgtTCAGTCCCAAGCAGTTTTACCTTTACACACGCTGCTTTTCGCTCATGTCACAGTACGTCCTTAAAAATGAGTCAGTATCTTGACAAAACACTGTATTTATATACATGTATTGTACAAATCGCTTTGAAAAGTTGGAAATACTGCAACTCAGACATGACTTTGTTGTTAatagattgtgtttttttttgcaaaggGGAGTTTGGGTTGAATGTTTGGATGAATGTTGGAGGTGCGCTAGGTggctttctcccccccccccttcagaTATGGTCGAATCTAACGCACCTCGCGGCGCTGTGCACTATTTATTTTCTGCCCTCTACCGGTGGAGTGTTATTTATTAACTTaatctactttaaaaaaaaaaaaagtgatgcaaTTTGACAATGTGGTTGTTTAATTCAGCATTTTTGATTCCGCAAGAACACAAACAGCTCTTAAAAGAAGTGTCAACTTTATGCCGACACAAAACGTAAcccattaaaatgcatttttaacGGGGTCCTAATTGCATATTGTTTACACCATCACTTTGCACACAAATAAATTCACAATAAAAATGCTGGTTTTTACATACCCCATAATTTTCCACTCTATCATCCCGACACACAAATGAGTTGACAGGGATAATATTTTAATGAACAGAGACCAAAATGGAACTTTACTGGCAGGAATTGGTGTTCTGTGTATGCTGCGGGGGAAATACTGGGACATACTTTGGCCGGTGTGATCGTGAAACGGGTATTAAATCATATTCTCTGAGCtgttaaaaagtcttaaaacatCTAGCTCGTTAAATCCTTCCCAAACCCTGCTCTGTTATCCTCTAAAAGAATTTAATTGTTGAGCTTCTTTTGCCCGACTTGCATCATTTCCCTGCAAGCTCTGCAGCAAACCGTCTGTGGCCTTAGGATTTGGGAACCAATGtaatcatttaatttaaaaaaaaagaacagtagTTGCAAAATCTTGAATTAATCAATGTTGAATTTGTTTCCAAACGCCGGCTCAGAtgacaggggaaaaaaagaaagaagggaaAAACAAGTTGAcctttttatttcacattttgatCACTTCTTTCAAAAACCCAAACCCACTTTTGTACTCCGTACGGGAACGGACTGTTGGTTGAGATGTATTTGTATAATTAACGGGAGGAGCGGTGATGAAGATGTGCCTCTTTTAAACCCACCGTAAGCCTCTTAATCGTCATTACTGTTCTAACTTTGTACCGTGAGAAGTCTAGCGAGGATCCCTTTGCCGTGCTCCACTCCTACAGAACGAGCTGTCGTACTCTGGGTCTTTCTCAAGCCCGCTTCCAATAATTTTGTATAGAAGCTGCCAATAGCCAATTAGCTATATTTACCGTCTTTGTTTCCCATTTTCATGCCAAACAATTCCCTGTATTCTGTGTTCTTCTTCCTGTTGTCTTCCCGGAGGAAgatgaagattttttttcttctgtaacTTGAGTGATTACAGTATCAATGTATCTCAATGTtattggtataaaaaaaaaaaaaaatgttaatctCATAAATAAGA
>XM_039792938.1
CAAGGCGCGTGACTTGACGGTTATGTGTGTGCTAAGGACAGGTGGCAGCCCCGGTTAGGCGAGCTGCTGTTGTTCTCAGCACAAAGAGCAGAGCCGGAGAAACACTTCAAATTCACATTCAATTGGAAAAAACATGAACACGTTACGGTAAATTCAAACATTATccgctaaataaaaaaaaaataatgtttgtgaCGCGTTTTGCGTGAAATGTCCGACAAGGGAGACAAATCCAACAGAAACTGCGCAGTTTAATGGGAGCCGTGACCTGAGCAGATATGCCAGCTGACGACAAGGTTGCCATCCTGACGGACGACGAGGAGGAGCAGAAGAGGAAGTATGTGTTGGCCGAGCCGTTTGACGCGCAGTCGTCGGGTCAGCCGGCAGGTGTTCCCGCGGACACGGCGACGCCAACTGCGGGAACGCCGCCCGAGCAGCTGGAGGCCCCGCGGGCCGCCTCAACGGACTGCTGCGAGGGGATGTGCCTGCGCATCAACAGCCGCCTCCTCATCTCCAAGGTCTTCTACCTCTTCTTCTACGCCGCGTACGGCTCGCTGCACCCGCTGCTGGCCCTGTACTACAAGCAGCTCGGCATGTCGGCCAGCCGCAGCGGGCTGCTCGTCGGCATTCGCTACTTCATCGAGTTCTGCAGCGCCCCCTTCTGGGGCGTGGTGGCCGACCGCTTCAAGAAGGGCAAGATGGTGCTGCTGTTTTCCGTCCTGTGCTGGCTGGTGTTCAACTGTGGCATCGGCTTTGTCAAACCGGCGGAGATGATGTGCGTGGTGGTAGGCGCCGACCTTCCTCCGACAGCGGCGGCGCCGCACCCGACAACTACTCTCCCGCACGGCAACTTCACCACACAGACGGGCAACTCCACCAACCGCACCAGAAGTCGCCGGAGCTTTCTAGAGCTCACCGGGCTTCCGGACATCCTGGACTCTCATTTCGGCGCGCTCCGCCGGCCAAAGCGAAGCGCAAACCTCAACGCCACTTCCGCTCCCTTGGAGCCAGCCAGCACTACCCAGCTGGCACCGAACAACACcctccccaccaccaccaccaccgcgACCCCCCCGGCTCCGACCAAAGCCAAGAAGCACCAGATTGTCTACAACAAGGACCAGGTGGAGAGCATCTTCCTGCTCATCCTGCTCGTTGTCATCGTCGGCGAGTTCTTTAGCGCGCCGGCCGTCACCATCGTGGACACCGTCACCCTGCAGTACCTCGGCAGGGCGCGCGACCGCTACGGCTTGCAGAGGATGTGGGGCTCGCTGGGCTGGGGTCTGGCCATGCTGCTGGTGGGCATCTGGATCGACCACACGCACGTGACCGTTGTGATCGACGGCGTGGGCTGCGTCGTGCCCGACTTCCGTCTCCACAATTACCAGATCGCCTTCATTGTCTTCGGCGTGCTGATGGGCGCCGCGTTCATCGTCGCCACTCAGTTTTACTTTGATAACGGCGGCGACTACAGGCAGGAGCTTCCGGAGGGGGTGGCCGAGGACGGGAGCAGCCCAAGAGCGTCGCCCGAGTCAGAGTCCGACTCCTCGGGCCGGACGCCCGTCAGCCCGGACGCCGCCCAGGATTTCCGCTACAGCGATCTGCTGAAGCTGCTCTGCAGCGTGCGCTACAGCTCGGTGCTGTTCGTCGCCTGGTTCATGGGCTTCGGGTACGGCTTCGTCTTCACCTTCCTGTACTGGCACCTGGAGGACCTGCACGGGACCACTACGCTGTTCGGGGTCTGCTCGGTCCTGAGCCACATCTCGGAGCTCGTCGCCTACTTCACCAGCCACAAGTTCATCGAGCTGGTCGGACACGTCAGGGTTCTGTACATCGGCCTGGCCTGCAACACAGCTCGCTACCTGTACATCTCCTACCTGAAGAACGCCTGGACCGTCCTGCCCATGGAGGTCCTCCAAGGTGTGACTCACGCCTCAGTTTGGGCTGCCTGTATCTCCTATCTGAGTGCCGCGGTCCCGCCGGCCCTGAGGACATCGGCGCAGGGCATCCTGCAGGGCCTCCACCTCGGCCTGGGCCGCGGCTGCGGAGCCATGGTGGGGGGAGTGTTTGTCAACTACTTTGGTGCTGCAGACACGTTCCGAGGAATCGGCATGGCCTCCCTCGTCATCCTCCTAATCTTCTCCTTCATCCAGTGTCTGTttggagagacagaggagaaagAGGACAGAATGCTGGCCGAGAACATCCCGGTTCCCTCCAGCCCGGTTCCCATCGCTACCATCGACCTGGTGCAGAGCCAGACCGTCCCCGGGAGCCCCACCTCGGCACGCCTGGCCGCCCCGCTGCCCATCATTAAGACCAAACaccaggaggagcaggaggacgTGAGCAGACCCGCCTGGGTGCTCTCAGGCGCCCCCTGGGTCACCATCGCCTTCGCTATCGTCCAGATCAAGGAGATGATGAACATGGTGAAGAGCCGCGCGCCGCCCACAGAGACTCAGCCCCTGCAGAAAGgTACCTAATGAGCAGGCGTCGGCCGAGTACAAGGCGGTGGCGACGTCACACAGAAACCCCGGTGATGACGGCACGGAAGCGCCCACGCAAATAAATGCcgcccgtccagcgcccacagACTCTAACGAGGACAAAG

Function

symbol description
mfsd6 Predicted to enable MHC class I protein binding activity and MHC class I receptor activity. Predicted to be involved in antigen processing and presentation of exogenous peptide antigen via MHC class I. Located in membrane.

NR:

description
PREDICTED: major facilitator superfamily domain-containing protein 6 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792937.1 True 4229 mRNA 0.53 7 17491167 17507260
XM_039792938.1 False 2614 mRNA 0.61 8 17492787 17507261

Neighbor

gene id symbol gene type direction distance location
nab1b nab1,LOC102789507 coding downstream 18008 17440396 ~ 17473159 (-)
LOC120554214 LOC103374344,LOC101068604 coding downstream 58913 17390637 ~ 17432254 (-)
LOC120554244 NA coding downstream 205855 17278354 ~ 17285312 (-)
LOC120554225 NA coding downstream 256465 17218191 ~ 17234702 (-)
LOC120554205 NA coding downstream 282854 17185387 ~ 17208313 (-)
LOC120554202 LOC102788442 coding upstream 41322 17548583 ~ 17597150 (-)
ahr2 NA coding upstream 97661 17604922 ~ 17688512 (-)
LOC120554260 NA coding upstream 211736 17718997 ~ 17732940 (-)
LOC120554000 LOC100690921,LOC103360025 coding upstream 355057 17862318 ~ 17877888 (-)
LOC120554256 NA coding upstream 459463 17966724 ~ 17967809 (-)
G235571 NA non-coding downstream 77287 17411986 ~ 17413880 (-)
G235542 NA non-coding downstream 125732 17365200 ~ 17365435 (-)
G235512 NA non-coding downstream 160990 17266260 ~ 17330177 (-)
G235471 NA non-coding downstream 315207 17175622 ~ 17175960 (-)
LOC120554268 NA non-coding downstream 574468 16876009 ~ 16916699 (-)
G235635 NA non-coding upstream 5356 17512617 ~ 17544436 (-)
LOC120554284 NA non-coding upstream 181709 17688970 ~ 17707496 (-)
G235688 NA non-coding upstream 343807 17851068 ~ 17851341 (-)
G235691 NA non-coding upstream 346923 17854184 ~ 17855048 (-)
G235695 NA non-coding upstream 350805 17858066 ~ 17858278 (-)
G235350 NA other downstream 387650 17064302 ~ 17103517 (-)
trnat-cgu_19 NA other downstream 735102 16755993 ~ 16756065 (-)
LOC120554263 NA other downstream 748879 16736186 ~ 16742288 (-)
G235387 NA other downstream 874851 16611983 ~ 16616316 (-)
LOC120554218 NA other downstream 1138290 16326093 ~ 16352877 (-)
s100b LOC103360204,LOC104927403 other upstream 227470 17734731 ~ 17745257 (-)
LOC120554370 LOC103370263 other upstream 763817 18271078 ~ 18327103 (-)
LOC120554371 mbd5,LOC102784158 other upstream 896965 18404226 ~ 18439418 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other upstream 2016243 19523504 ~ 19529242 (-)
G236111 sts,LOC108241831 other upstream 2224058 19731319 ~ 19732537 (-)

Expression


Co-expression Network