LOC120554205


Basic Information

Item Value
gene id LOC120554205
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17185387 ~ 17208313 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792941.1
ATGCTGAAGTCGATCTCATCATCATCTGATCTGACCGTCAGAGACTCGACAGACAGACCAACTTCTCTCCTTCATCTGAgcgTGACTTCAGTGAAACCTCCAGCCATCATGTCTCTATCAAAGGAGAAGTCACACCACCACAAGGGGCGCTACAACGGGAAGGTGCCGACCTCCAACCTTGGGCCTTTTATAGGAGATTTTCGAGAGTTTGAGGCTTTTTCTGACGCTCCCACAGCCAGAGCATCTGCACCTGATGGCACGTATCTGTCGGTGCAGATGGTCGACACGTGTCAGCAGATAAACAAACCACAACACAAGACGGCCTCCTACCACACCCCCAACCTGGTGGTCCGCCGCGGTCAGGAGTTCCTGGTGAGAGTCACCTTCAACCGCCCGCTGGCGCAGAGCGACGACTTCCAGCTCGAGTTCCTGATTGgtgAAAACCCTTCAGGCAGCAGGAGCTCCCTGGTGGTGGTAACCTTCAATTCCCGTCTTGGAGGCCCGTGGTCGGGTCGGATTGTGGAGAGTCAGGGTGTAACTGTGACTCTGGGCATCACGCCGACGCCCGACGCCATCGTGGGAAAGTTTCGTACGTACGTGGCCATCGTAGCGGGCACCGGCATGCAGCGAACAGGGAGGGACGCCGCCACCGACCTGTACGTGCTGTTCAACGCCTGGTGTAAAGatgatgcgGTGTTTCTTCCTAATGAAGCAGAGCGGAACGAGTACGTTCTCAACGACCATGGTGTGATGTATCAGGGTTCATTTGATGCTGTGACAACCCATGACTGGGTTTATGGACAgTTTGAGCGCGGCATTTTGGACGCCTGTATTTACATCCTGGATGCGTCTCAGATGCCGATCAGCGACCGAGGCAACATCATCAAAGTGATCAGGATGGGATCCGCAATGaTTAACTCTAAGGACGATAATGGCGTGTGTGTTGGGAACTGGAGTGATGACTACTCAATGGGCAGGTCCCCGACGTCTTGGACAGGCAGCGTCCAGATCCTTCTGCAGTACGCCAAAACCGGAGTCCCGGTCTGCTACGCCCAGTGCTGGGTATTTGCTGGAGTCTTCAACACCTTCCTACGTGCCCTCGGCATCCCGGCGAGGACAATCACCAACTTCTTTTCAGCTCACGACAACAACGGCGACCTGACGACCGCAATCATCCGCCTGCCTGATGGTTCGCCGGACGACAGCAACACCATGGACTCCATCTGGAACTACCACTGCTGGAACGAGGTGTTCATTAGGCGCGCCGACCTGCCGCCCGGCCTCGGAGGATGGCAGGTGGTGGACGCCACGCCCCAGGAGACCAGTGATGGATATTATCGCTGCGGTCCAGCTTCAATTATCGGCATCAAGGAAGGTTTGCTCTGTCACCCGTTTGATTCAGGGTTCGTCTTCGCTGAGGTGAACAGTGACGTTGTCTTCAACAAGCTGGATCGCTACGGGACTCTGACTCCGTACTGGGTGGAAACGGATTACATCGGAAAGGCTGTTTACACCAAATCTTTGGGCAGCAACTCACCGAACAACATCACACAGAACTACAAGTACCTtaaagGTAGTGAAGAGGACAACAGGACCATGGCCCGGGCGGAGGCATACGACATTGAGAGGCATCATTCCGAGCTGCCTGAGACCACACTGTCTGTCATTATTACCGTAGGACAGGTCAACCTGGGTCAGGACGTCAACCTACAGGTGGATTTCCACAACCCCAGTGATGTCCCCAAAACCATCCAAGCCAACCTGGCCGGGTCCGTCATCTTCTACACCGGAGTCAGAGCCAGTCACTTGATAAATCACAACTTCACCATCACTGtgccagccaatcagatgaaGAGTGCGATGGTGAAGATCACAGCTGATGAGTACATGCCATATTTGGGCACTCAGCGTTGCATGCACTTTGTTGTGACTGGACAGACTGAGGACGAATCAGTGAGCACCATCAAGGTGCTCCATCTGCAGATCCCGACGCTCACCGTGACGCTGAGTGGCTTGCCTCGGGTGCAGCATCAGATGTTTGCCAATGTTACCTTCACCAACCCCTTCAACTTCGCCCTGAAGGCCTGTAGGCTGGTCATGGAAGGAGCTGGACTCATGAGCGAGAAGACACATCTCTACGGagtcATTGAGCCTCAGGCCTCGATCTCATGGACGGAGTCGTTCAACCCTCGGCTGGAGGGAAAGCGCTGCATTGTGGCGGTGATGGACTGCAGCAACCTCTGTCAGGTGAGGGGAGTTGCTTGCGTCGACATCACGCCCTGAGATGATTGGttcacagagctgtgtgacccCCCCGCCCCTCTCCATTTCCACCACGCCTCCACCAATCATAGCAGCTTCAAAACTGAGTGGGCGGAGCCGACAAACCAGAGCAAACCACGTCtttgatgattttatttcttgtttgACTTCAATGTACCCAAATCCCAGGGAATTCCGAGCTTTGATATTTGGCGcgacattttaaaatgagtttAGCTAGTTTAGTGAGGAAGCTCACATAGAGGAATAATAATAGATCCTTTTTAATAGCTGCGTTGGGCAAATTTGAGGCTTTCTAAAATGAGATTTGAGAACTAAAGTATGAGCAGATAACTGAGTTAGTCACCGCTGGATCAGTTTGGCAGCAGCTCTCCTCCATCACATCTCCGCTCGGGCATGAATTGAAATATTAATCATTAcgctttttaataaataaatgtctcaGAGAGTCTCCTCTCAGTCTGGGACATGACATCtgtttaaagtgactatatgtaaatttttaatgtttctgaagctCTGTCCTTTTTCATACAACAGTCTTCATTGACCTGTAACCGCAAACGAGCCCAACAGTAAAAAGAACGCTAATTTCTATGTTTTTTACCACATAAtcatcattttaatgtttggaTGAAAATTTTTTTGGGTGAttgtagtcttttttttttttttcctttcactgCTGAACCTTTCCTACCAACAATAAAGCATTTTCAAAACCA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792941.1 True 3008 mRNA 0.51 18 17185387 17208313

Neighbor

gene id symbol gene type direction distance location
LOC120554231 NA coding downstream 25192 17143971 ~ 17160195 (-)
LOC120554233 NA coding downstream 158656 17016204 ~ 17026731 (-)
trnat-agu_62 NA coding downstream 276969 16908345 ~ 16908418 (-)
trnat-cgu_24 NA coding downstream 277565 16907750 ~ 16907822 (-)
trnat-cgu_23 NA coding downstream 277902 16907413 ~ 16907485 (-)
LOC120554225 NA coding upstream 9878 17218191 ~ 17234702 (-)
LOC120554244 NA coding upstream 70041 17278354 ~ 17285312 (-)
LOC120554214 LOC103374344,LOC101068604 coding upstream 182324 17390637 ~ 17432254 (-)
nab1b nab1,LOC102789507 coding upstream 232083 17440396 ~ 17473159 (-)
LOC120554203 mfsd6 coding upstream 282854 17491167 ~ 17507261 (-)
G235471 NA non-coding downstream 9427 17175622 ~ 17175960 (-)
LOC120554268 NA non-coding downstream 268688 16876009 ~ 16916699 (-)
G235427 NA non-coding downstream 308533 16873835 ~ 16876854 (-)
G235413 NA non-coding downstream 409842 16766666 ~ 16775545 (-)
G235357 NA non-coding downstream 474195 16681727 ~ 16711192 (-)
G235512 NA non-coding upstream 57947 17266260 ~ 17330177 (-)
G235542 NA non-coding upstream 156887 17365200 ~ 17365435 (-)
G235571 NA non-coding upstream 203673 17411986 ~ 17413880 (-)
G235635 NA non-coding upstream 304304 17512617 ~ 17544436 (-)
LOC120554284 NA non-coding upstream 480657 17688970 ~ 17707496 (-)
G235350 NA other downstream 81870 17064302 ~ 17103517 (-)
trnat-cgu_19 NA other downstream 429322 16755993 ~ 16756065 (-)
LOC120554263 NA other downstream 443099 16736186 ~ 16742288 (-)
G235387 NA other downstream 569071 16611983 ~ 16616316 (-)
LOC120554218 NA other downstream 832510 16326093 ~ 16352877 (-)
s100b LOC103360204,LOC104927403 other upstream 526418 17734731 ~ 17745257 (-)
LOC120554370 LOC103370263 other upstream 1062765 18271078 ~ 18327103 (-)
LOC120554371 mbd5,LOC102784158 other upstream 1195913 18404226 ~ 18439418 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other upstream 2315191 19523504 ~ 19529242 (-)
G236111 sts,LOC108241831 other upstream 2523006 19731319 ~ 19732537 (-)

Expression


Co-expression Network