LOC120554206


Basic Information

Item Value
gene id LOC120554206
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16616703 ~ 16638195 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792942.1
ATGCTGAAGTCGATCTCATCATCATCTGATCTGACCATCAGAGACTCGACAGACAGACCAACTCCTCTCCTTCATCTGAgtgTGACTTCAGTGAAACTTCCGACCATCATGTTTCTATCAAAGGGGGAGTCAAACAACTACAAGGGGCGCTACATTGAGCAGGTGTCGACCTCCAACTTTGGGCAATTAGAAGAAGATTTTCCAGAGTTTGAGCCTTTTCCTGACGCTCCCACAGCCAGAGCACCTGTTGATGATGGCACATACCTGTCGGTGCAGAATGTCGACATGTGTCAGCAGATAAACAAAACGCAACACAACACGGACGCCTTCGACACCCCCAACCTGGTGGTCCGCCGCGGTCAGCAGTTCCTGGTGAGAGTCACCTTCAACCGCCCGCTGGTGCAGAGCGACGACTTCCAGCTCGAGTTCCTAATTGgtgGAAACCCTTCGGCCAGTAGGGGCTCCCTGGTGGTGGTAACCTTCAATTCCCGTCTTGGAGGCCCGTGGTTGGGTCGGATTGTGCAGAGTCAGGGTGTAACTGTGACTCTGGGCATCACACCGACGCCCGATGCCATCGTTGGGAGATTTCGTATGTACGTGGCCATCGTGGCGGGCACCGGCATGCAGCGAATCAAGAGGGACGGTGCCACCGACCTGTACGTGCTGTTCAACGCCTGGTGTAAAGatgatgcgGTGTTTCTTCCTAATGAAGCAGAGCGGAACGAGTACGTCCTCAACGACCATGGCGTGATGTATCAGGGTTCATTTGATGCTGTGACAACCCGTGACTGGGTTTATGGACAGTTTGAGCGCGGCATTTTAGATGCCTGTATTTACATCCTGGATGCGTCTCGGATGCCGATCAATGACCGAGGCAACATCATCAAAACGGTTAGGATGGGATCCGCAATGATTAATGCTCAGGACGATAATGGCGTGTGTGTCGGGAACTGGAGTGACAACTACTCGATGGGCAGGCCCCCGACATCTTGGACGGGCAGCGTCCAGATCCTTCTGCAGTATACCAAAACCGGACACCCGGTCGGCTACGCCCAGTGCTGGGTGTTTGCTGGAGTCTTGAACACCTTCCTACGCACCCTCGGCATCCCAGCACGGCCCATCACCAACTTTGTTTCAGCTCACGACAACAACGGCAACCTGAAGACCGACCTCATCTGCCTGCCTAATGGCTTGCCGGACTACACCAACACCAAGGACTGCATCTGGAACTACCACTGCTGGAACGAGGTGTTCATTAGGCGCGACGACCTGCCGCCCGGCCTCGGAGGATGGCAGGTGGTGGACGCCACGCCCCAGGAGACCAGTGATGGATATTATCGCTGCGGTCCAGCGTCAGTTATCGGCATCAAGGAAGGTTTGATCTGTCACCCGTATGACCCAGGGTTCGTCTTCTCTGAGGTGAACAGTGACGTCGTCTTCTACAAGCGGGATCGCTACGGGACTCTGACTCCGTACAAGGTGGAAACGGATTACATCGGAAAGGCTGTTTACACCAAATCTTTGGGCAGCAACTCACCGAACAACATCACACAGAACTACAAGTACCCTCAAgGTAGTGCAGAGGACAACAGGACTATGGCCCGGTCGGAGGAATACGGCGTTAAAAGGCATCACTCCGAGCTGCCCAAGACCACACTGTCTATCATTATTAACGCCAGACAGgTCAACCTGGGTCAGGACGTCAACCTACAGGTGGATTTCAACAACCACAGTAATTTCCCCAAAATCATCCAAGCCAACCTGGCTTTTTCCGTCATCTTCTACACCGGAGTCAGAGCCAGTCACTTGAAATATCACAACATCACAATCACTGTGCCGGCCAATCAACtgaaGAGGGAGATGGTGAATATCACAGCTGATGAGTATATGCCATATTTGGGCACTCAGCGCTGCCTGCAATTTGTTTTGACTGGTCAGACTGAGGACGAATCAGTGACCGCCATCAAGGTGCTCGAGCTGCAGATCCCGACGCTCACCGTGACGCTGAGTGGCTTGCCTCGGGTGCAGCAGGAGATGTTTGCCAACGTTACCTTCACCAACCCCTTCATCTTTGCCCTGAAGGCCTGTAGGCTGTCCATGGAAGGAGCTGGAGTCATGAGCGAGAAGACCCGTTTCTacgaAGTCATTGAGCCTCAGGCTTCGATCTCCTGGACGGAGTCGTTCAACCCTCGGCTGGACGGAAAGCGCTGCATTGTGGCGGTGATGGACTGCAGCAACCTCTGTCAGgtgAGGGGAGTTGCTTGGGTCGACATCATGCCCTGAGATGATTGGttcacagagctgtgtgacccCCGCCCCTCGCCATGTCCACTACGacctccaccaatcacagcagctTCAAAACGGAGTGGGCGGAGCCAACAAACCAGAGCAAACCACGtcttttatgattttatttctcGTTTGACTTCAATGTACACAAATCACAGGGAAGCTTTGATATTTAAAATAAGTTTAGCTAATTTAGTGGGGAAGCTCGAGGGCTAAAGGTAATATAGAGGAATAATAACAGATCATTTTTAATAGCTTTATTGGGCAAATTTGAGGATTGTTTTTCTTTCCAAAATGAGATTTGAGAACTAAAGTATGAGCAGATAACTGAGTTAGTCACCGCTGGACCAGTTTGGCAGCAGCTCTCCTCCATCACATCTCCGCTCTGGAATGAGTTGACATATTAATCATTACTTTCTTTTTCATCTGCCGAACCTTTTCTATTAACAATAAAAGCATTTTCAAAACCA

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792942.1 True 2762 mRNA 0.51 18 16616703 16638195

Neighbor

gene id symbol gene type direction distance location
LOC120554223 NA coding downstream 60248 16531962 ~ 16556455 (-)
trnat-cgu_16 NA coding downstream 111773 16504858 ~ 16504930 (-)
trnam-cau_66 NA coding downstream 116173 16500458 ~ 16500530 (-)
trnat-agu_41 NA coding downstream 160242 16456388 ~ 16456461 (-)
trnat-agu_40 NA coding downstream 229858 16386772 ~ 16386845 (-)
trnat-agu_55 NA coding upstream 90239 16728434 ~ 16728507 (-)
trnat-ugu_45 NA coding upstream 225682 16863877 ~ 16863949 (-)
trnat-agu_60 NA coding upstream 226238 16864433 ~ 16864506 (-)
trnat-cgu_22 NA coding upstream 233661 16871856 ~ 16871928 (-)
trnat-agu_61 NA coding upstream 234846 16873041 ~ 16873114 (-)
LOC120554273 NA non-coding downstream 49612 16562804 ~ 16567091 (-)
LOC120554287 NA non-coding downstream 110072 16505591 ~ 16506631 (-)
trnat-cgu_15 NA non-coding downstream 262754 16353877 ~ 16353949 (-)
LOC120554275 NA non-coding downstream 271438 16340797 ~ 16345265 (-)
G235351 NA non-coding downstream 292467 16322888 ~ 16324236 (-)
G235357 NA non-coding upstream 43532 16681727 ~ 16711192 (-)
G235413 NA non-coding upstream 128471 16766666 ~ 16775545 (-)
G235427 NA non-coding upstream 235640 16873835 ~ 16876854 (-)
LOC120554268 NA non-coding upstream 237814 16876009 ~ 16916699 (-)
G235471 NA non-coding upstream 537427 17175622 ~ 17175960 (-)
G235387 NA other downstream 387 16611983 ~ 16616316 (-)
LOC120554218 NA other downstream 263826 16326093 ~ 16352877 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other downstream 328553 16248694 ~ 16288150 (-)
LOC120554377 LOC103355861 other downstream 1602889 14966316 ~ 15013814 (-)
G234898 NA other downstream 1766966 14847834 ~ 14849737 (-)
LOC120554263 NA other upstream 97991 16736186 ~ 16742288 (-)
trnat-cgu_19 NA other upstream 117798 16755993 ~ 16756065 (-)
G235350 NA other upstream 426107 17064302 ~ 17103517 (-)
s100b LOC103360204,LOC104927403 other upstream 1096536 17734731 ~ 17745257 (-)
LOC120554370 LOC103370263 other upstream 1632883 18271078 ~ 18327103 (-)

Expression


Co-expression Network