LOC120554217


Basic Information

Item Value
gene id LOC120554217
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16171047 ~ 16176028 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792964.1
ATTTGCATACTCGTGAGAGTGACTGTGCGCGCCTACGGCGCGCCCCTCCACCTGAGTCCGTGACTGTCCGTCATCCTCACCATGCGTGGCATGACCTTAGACCGCATATCACTGCGATGACTTCGACAAGTTCACCTGCAGCTACCAAATCTCAAGAGTTTGAGGCCAGTGTTATTGCTGCTGCACAAGGCCTCATAAACGTGCTAACGCAAAATATTCAGCAGCATCAACCGCCCCCCACACAGCAGAATTCAGTGCAGTTACAAGAGCAGCAAAGTCCGCAAGCACAAACGCCTAAACAAACACTTCAGGAGGAGATGACTAGGTCCTTTCCTGGCTTCTTCTCCAAAAGAAAAGGCAAAAACCGCTTTTCTCCGTTACAAACCACTCCAGGGAAGCCTAAAgtctgtaacgttaacgttaagccGTTCagcatatatgtatatttggtTAATAAAGGCTGTACCAGCACCCCTTCTGCTGCGGAAGAGTTGGAGTTTAGCCAAGCAGGGTTAGGGAAGAGGTCCCTCACCTTGACAGACGATATGAGCCACGCAGCGATAAACAAACTTCTCATTGAAGAATATCCCAAGATGGAGGGGGTGGAAGGATGGCTGTTCTACAAGGCTTCAGGTGGCCACGGTAGAAGGAAACTGGCTGCAGTTCCCCCTGATGTAGACGGTTATACAGGAAGACTAATTCGCACTGTTTCAGGTGCTGGGAAGACCATTTTGTATGTTGTGCCACTGCAGCAGGACCTTGATCTTACTCCATTGCCGTATGATGCACCTGAATTCCAAAAAATGCCGAAGACTGCATGTCAAGTGTGCAAAGAAAGCATGCCTCTGCATATTCTAGCATTGCACATCAAGGGTTGTATAGGGTCTCAATCTGCAacagatgatgatgaggagGACTGGGGTAGTGAGGTCCAGGTTCTTTCTGTCACAAATTCACCACTTGAGCACCCTAAGAAAGAGTCCAGAGATGAACAGGATAGAAAGGAATGCCCTATATGTTGTGGTTGCTTTCCATCAGATGACATTGCTCTGCATGCAAGCTTGTGTGGTGAAAGTCCACAGGATACTCCTGTCTACAATTCTGACTTCAGTCCCACTTCAGGCCCTACCAGTAGTGTCCTATGCGAGGGAAGTGTGCCTATGACTGAAATATCGAGTGAAAATGATATCCTCCAGTTGCTTGCAAATCAAGTAGATGCAAGCAAAGATTTTAAGATCTGCATCACCCGAGATGACCTTGTCCAAAGAGGCTTCATTCAGTGGCAAAGACAAAAGAAGGGCTCCCCTGTCAACAAACTCAATGTGACTTTCATTGGAGAAGCAGGAATTGACACTGaaaTGATGAATGGCATTGAGAGGCGACTGTTCGAAGGCAATGACACAAAGGGAAAGAGTCCTGTCTACTCCATAAGTGACCTAGAAAATGGTTTCTACAGAACTGCAGGAGAAGTGTTCTCAGTCAGCCTCGCTCAGGGTGGCCCAGCACCATGCTTCTTTAGAAATTGGTGTTTCCAGTTCCTTGCAACAGGAGACTTTGACACTTTGCAGTTGACCAAAGACGATGTGGACGATCAGGAATATTCTTCAATCATAGAAAGGGTGGAGGCGGCAACTGATCTGACAGAGTTGACAGAAGAAATTGTGAGCTGTGGTTACACAGGGCTTGTGAAGGTTGGCAGGAAGGACAGTATTATAAGAGCCATTGTTCTACATGCTACAATGCGTCTGACTCCTATCCTTCAGCAAATCAGAAAAGGCATGAAGGTCTACAACCTTGTGGAGTTGATTGGGAGGCACCCAGATCTCTGCTCAAACCTGTTTGTCCCCAAAGAGGATGATGACAgCAGATGCTGATTACATAATGAGCATCCTAGTGCCTGAGCTGAGTGAGAGGGGAAGTCCAAGGCATCTAAGAGAAATTGCCATCATAAACTTCTTCCAGGACTTTCTGCAAGACCTCGAAATCACAgGTCAGGATGAAGACCAGGGTGTGTGTGAGCCTTTGACCCGAGAAGCACCACAAAGTCTGAATGAAGAATGTCTGGAACAGCAAATAAACTTGAGCTTGTCGGTCCCAACAGTGATGCAGTGGTTAACTGGACAAAGGCACAAGCCCCTTCTTCCCTCAGAAAGggcagattttaaaataaatgtaagatTTGAACACCACTGCAAAGAACAAATGCCTGGTCACCACATTTGTTACCCACTTGTGAGTGCCTGCACAAATACAATAACTCTTCCTGTTGCACATATGAATACATACAGTGAGTTCAGAGATATAATGACAGTAGCGATCAGAATGAGTAGAGGTTTCGGCAGAGTTTAGAAGCCATGTTTTACTAGTCAAAGTCAGCCAGTATTGTGCGTTTAGGCATTTTCAAGAGATGCCTTAACAGCAACATGTTTgaaaaatatgttcagtgaatgATTCACTATTTTGTATaaatattcaatggaaaataagTGCCTGGTTCCTCtttagcatgttttttttaatactgaaattacaaaatgtgtattttaggACCAGTAACAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792964.1 True 2560 mRNA 0.45 15 16171047 16176028

Neighbor

gene id symbol gene type direction distance location
trnat-cgu_14 NA coding upstream 4426 16166549 ~ 16166621 (+)
trnat-agu_39 NA coding upstream 8092 16162882 ~ 16162955 (+)
LOC120554230 NA coding upstream 18174 16140119 ~ 16152873 (+)
LOC120554250 NA coding upstream 50039 16101835 ~ 16121008 (+)
LOC120554201 LOC103352956 coding upstream 70535 16084409 ~ 16100512 (+)
LOC120553997 NA coding downstream 7812 16183840 ~ 16194852 (+)
LOC120554255 NA coding downstream 25394 16201422 ~ 16220686 (+)
trnat-ugu_42 NA coding downstream 48727 16224755 ~ 16224827 (+)
LOC120554222 NA coding downstream 318104 16494132 ~ 16501285 (+)
trnas-uga_33 NA coding downstream 326044 16502072 ~ 16502153 (+)
LOC120554276 NA non-coding upstream 44256 16125461 ~ 16126791 (+)
G235152 NA non-coding upstream 287037 15883763 ~ 15884010 (+)
LOC120554272 NA non-coding upstream 487557 15676977 ~ 15683490 (+)
G235074 NA non-coding upstream 503691 15666872 ~ 15667356 (+)
G235056 NA non-coding upstream 556494 15614216 ~ 15614553 (+)
G235185 NA non-coding downstream 19534 16195562 ~ 16195700 (+)
G235216 NA non-coding downstream 45392 16221420 ~ 16222735 (+)
G235243 NA non-coding downstream 146813 16322841 ~ 16324248 (+)
trnat-agu_42 NA non-coding downstream 330593 16506621 ~ 16506694 (+)
trnak-cuu_34 NA non-coding downstream 331541 16507569 ~ 16507641 (+)
LOC120554227 NA other upstream 1128603 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1260972 14806527 ~ 14910075 (+)
G234651 NA other upstream 2026177 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 2968235 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 3145527 13002963 ~ 13025520 (+)
LOC120554234 NA other downstream 212669 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 580537 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 584330 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 585471 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 586508 16762536 ~ 16762608 (+)

Expression


Co-expression Network