LOC120554222


Basic Information

Item Value
gene id LOC120554222
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16494132 ~ 16501285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792974.1
TAAACAGTGTGACACCCAGCGGAAGTAAACAACACAAGCGCCCCGTAGCGTTAGCTGAATGCTCGTGTTGAGTGAGCTGGATAAGACCGTATTGTAGTCGTGGTGCAGCTAATTCTTTCGGCTGTAATTAAGCAGCAATGTCTTCAGTTGGGTATTTGAGAGAGTTTGTCAACGAGCGgctaactgctgctgctgaagaaatATTCCGAGTTTTTGAAAAGACTATCGCCGAGTACGAGGAGGAGATCCATCGTCAGCGCAGACTGTTGGATATCGTTTGGAAACCCGACATAAGGTTACACAGGATAGACGTCCAGCACCTGTTGGTTGTTAAAGAAGAATTTCCCCttgagcagcaggagtggagctccagtgtggaccaggaTCAGCCAGAGCCCCCACATATTAGAGAGAAACTATGGACCactcaggagggagagcagcttcaagagctggaggaggctgacCAGCTGATCACCAATTTCCCATTTACTCTTGTCCCTGCAAAGAAGGAAGATAATGTAGAGAAACCTCAGTTCTTACAGCTTCATCAAGGACAAACTgaacaaattaaaacagaagctgatggagaggactgtggaggaccagaacaaGCCATGAACTCAGATCAACATTTACACCCAGATACTGATGACAAGTCTGGAGACTCTTCCGAATCTAAGAATAATGGCAGTGATTCTTGGAAAGAGAGCAATGGATGTCTGTCAagtttaaactctctgaaacataaAGTTTCTCAGAGTGATGAAGCATCAAACAACAATCACCTGACGGTCCACAGAAGTCATACAGGAGAGGAACATTTTACAGAAGGAGGCAGTCTGAGCCAACACACAATGGTTCATACAGGGCTACACATGGGGGTAAATCAGCAGGACCCGGAGCcaccacacattaaagaggaacaggaggaactccGGATCAGTCAGGacagagagcagcttcaagggcggGAGggggctgatatcaccaagttcccaatAACTCTTGTctctgtgaagagtgaagatgatgaagcgaGACCTCCGTTCTCACAGATTAATCAAAGACAAACTGAACAGATGAAAACAGAAGCTGACGGGGAGGACTGTgaaggaccagaaccagccatgAACTCAGATCCAGATACACATTTACAACCAGATAATGATGAcgagactggagactcttctgaacctgagactgataacaatgctgattggaaggagaccaaaGAACCTCAGTCAGGTTTAAACTCTATGAAAAATAATGAAGTCCCTATCAGTGATTCGAGATTTAGTGCTGGTGAGaatccatttagctgctctgagtgtgggaaaagatttggcCGCAAGACAAGTCTGAAGAGACATATGATAACTcatacaggagagaaaccatttagctgctcagtctgtaataaAGCTTTTACGGACAGTAGACATTTAAAGAGTCACATGAGAagtcacacaggagagaaaccatttagctgctcagtctgtaacaGAGCTTTTACAGTGAGTGGAAGCTTAAAggcacacatgagaatccacacaggagaaaaaacatttagctgctcagtctgtaagaaagcttttaaacagaaaggggGTTTACATAGACACATGATaacccacacaggagagaaactaTTAAGCAGTGTGGAGTGAAGCTCCAGTCTACAAGGAGAGCAGAGAACCTCCGTCAGGGTTAAACCCtctgaaaatgaatgaattatctAAAGGTGATATGAGCTGTAATAATCTGTGGCTCCTTAAAAAGACATAAAAGCCTAAAATCCCATAATTTTAAATGTAAGCTTTAAAACATCTGTCATTACAGGCTTATAAATTGATTTGATTATAAAGGTAATGTTACTGTTGAGCTCTTTGATACTCCAAAGATTAACTTGTCAGTTGTTGCAACTTAATGTGGACTtggaaatgaaacaaaaaaatcagTGTAACCCCAGCCCTCTGCAAAATGGCAGCTGATTTGTAGTCACAAGGATCAGCCACACAACTCAGTCTCCCAGCATacagtctgtgtttttgttccgGTGCTGCCTGCTGTTATATAGAGTATGCCAGTTTGAAGAGATGGGTTTAGACAGGATTTGAATGTGGGGAGAAAGACAGTGGATTGGCGACCAGATTAAATTAAGATAACAAACTGACAATGAGGCActgctgggatttgaacccaggatcTCCTGTTTATGAGACCGGCTCTTCAACCACTAAGCTACAGCGCCTCCTCCAGCTTGACAAGAATACAGTGAGTGAACAGGGATGTGGACAATAGATGTTATAAAAAACACActgctttgcaaatgttttttcagAAGGGAAATGGATTGAACACATTTGTTAATGCTTTTAAACGATTTTAGTGAGAAACCCTGAATGCAAACATATCTTTTGTTagttaaaggggcgctatgcagttttggccatttcttctctgttttctcactttttgctCGCAGCTTTCTCTACAGAACTCCCCttacagcttcagaatagatatttggcagcccctatgtttacttgtgtctgactcctcgctcggtcagtctgctgtttactctttctctgttcctccgacagtgctttcctagctttctgcttcttttctgccggctcagccatgatgatagtgtgaaaaactccatcgctaccttgttagccggttcctgaatagGTGTAAGTGTGCAGATCGAGCCGCAGGCTCCAGCTACTTTCAATATGTGAAAACCTATGGTTAtccttgtattacattacactgtagggccatgtagctaataagtagcctgtaacaaatataaaatcagAAAGATttatcacatgcacacaccagttCTGTTTAGACTACTTAATCCTATTGTATTTGTTATTTCCCCAGTTGTAACCTGGTTTCATTTGTGCAGCCTTATTGATGTGATATGTGAGAGTAAGTGGATTTTATAGGACTGCTTagctaatcaaataaaaatgatggaTCTCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792974.1 True 3009 mRNA 0.43 3 16494132 16501285

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_42 NA coding upstream 269305 16224755 ~ 16224827 (+)
LOC120554255 NA coding upstream 273446 16201422 ~ 16220686 (+)
LOC120553997 NA coding upstream 299280 16183840 ~ 16194852 (+)
LOC120554217 NA coding upstream 318104 16171047 ~ 16176028 (+)
trnat-cgu_14 NA coding upstream 327511 16166549 ~ 16166621 (+)
trnas-uga_33 NA coding downstream 787 16502072 ~ 16502153 (+)
trnak-cuu_44 NA coding downstream 121398 16622683 ~ 16622755 (+)
trnat-agu_53 NA coding downstream 121718 16623003 ~ 16623076 (+)
LOC120554238 NA coding downstream 142357 16643642 ~ 16658812 (+)
LOC120554253 dhrsx,LOC104961879 coding downstream 158518 16659803 ~ 16674690 (+)
G235243 NA non-coding upstream 169884 16322841 ~ 16324248 (+)
G235216 NA non-coding upstream 271397 16221420 ~ 16222735 (+)
G235185 NA non-coding upstream 298432 16195562 ~ 16195700 (+)
LOC120554276 NA non-coding upstream 367341 16125461 ~ 16126791 (+)
G235152 NA non-coding upstream 610122 15883763 ~ 15884010 (+)
trnat-agu_42 NA non-coding downstream 5336 16506621 ~ 16506694 (+)
trnak-cuu_34 NA non-coding downstream 6284 16507569 ~ 16507641 (+)
trnat-agu_43 NA non-coding downstream 6608 16507893 ~ 16507966 (+)
trnak-cuu_35 NA non-coding downstream 7556 16508841 ~ 16508913 (+)
trnat-agu_44 NA non-coding downstream 7880 16509165 ~ 16509238 (+)
LOC120554227 NA other upstream 1451688 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1584057 14806527 ~ 14910075 (+)
G234651 NA other upstream 2349262 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 3291320 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 3468612 13002963 ~ 13025520 (+)
trnat-cgu_20 NA other downstream 255280 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 259073 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 260214 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 261251 16762536 ~ 16762608 (+)
LOC120554243 NA other downstream 379354 16880639 ~ 16932606 (+)

Expression


Co-expression Network