LOC120554238


Basic Information

Item Value
gene id LOC120554238
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16643642 ~ 16658812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793009.1
tgtgtttgtgtttccggGTCTCGGAAGATGTTACGACCTCCGTCCGGTTGTTTGCATTTTACGTCGTGATGAGGGTGCGCCAGTGTTTGGTTTCCTGAAGGGAGAAACATCCCAATCTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgCTCGGGGAGAAGTCTAGGAGAGGCACTTCAACATGGACTCTGTCAGCTGGCCAGCGGAATGGGTGGAAGACGTGTCATATATTATTCTTTAAGTTACCCTGTATGGAAGAAATTCATTGTTGTGAACTgatgcagctttatttgtatagcacatttcaacaGCAAGGCTGGAGTGAACTCGAGGAGGACATTTGATTTTACGTCCATAAAGCGTTTGGCAGTTTGCGGAGAAAACTTCCGGAAGTCCCGTTAACATGGACTCGATCTACAGTGACCACACATACTCGCACTGTTTCAACCATAAAGctTTACCTTCAGATGTCCAGAAAGTGATTGTTGGCAAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACGAAGcacccacacattaaagaggaacaggggGAACTCCGGATCAGTCAGGATAAAGAGCaacttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaaaatGATGAGGAGAAACCTCAGttctcacagcttcatcaaagacaaactgAACAGATGGAAACcaaagctgatggagaggactgtggaggaccagaaccagccatgAACTCAGATCCAGATACACATTTACAACCGGATACTGACGAcgagactggagactcttctgaacctgagactgatgacagtgctgattggaaggagaccggagaacctcagtcaggtttaaactctctgaataaTGATGAAGTCCCTGTCAGGGGTTTGAGATGTAGTACTGGTGAGAAAGAGGGTTGGAAAATATTTGGCACCAATGGAcatctgaagagacacatgagatCTCTTACAGCAGCGAAACGATTTAGCTGCTCGgtctgtaagaaagcttttaaACACAGTGGAAATTTAAGtacacacatgagaatccacacaggagagaaacgaTTCAGCTGCTCGgtctgtaagaaagctttttTACTAAGTGGAAATTTACAGAAGCACGTGAGAATCCACACGGGAGAtaaaccatttagctgctctgtATGTACGAAAGCCTTTACATTTAAGCAGGATTTAGATAGACAcctgagaatccacacaggagagaagccatttAGCTGCTCCGTGTGTAAGAAAGCTTTTATACAACGTGGGgatttacatacacacatgagaatccacacaggagagaagccatttAGCTGCTCCGTGtgtaagaaagcttttacagTGAGTGGAACTCTAAAGGCACACATGAGaacccacacaggagagaaaccgttTAGCTGCTCGgtctgtaagaaagcttttaaACGGAATGTAAGTTtacaaaaacacatgaaaatcCACACAGGAGCTCCAGGAGTGGAGGCAGAGAAGGAGAGCAGAGAACCTCATTCAGGCTTAAACAATCTGAAAACAAAAGAATTCTCTAAAAGTGATAAGGAATCTAATACTGTTTGGGTTCCAGGATTTACCGATGTAACATTTTTCCAGGATCCAGTGTTCATACTTTGGTAATGTGTGCGGTATTAACAGTGTGTCCCCACGTGTTTAGAATTGacttgtggtggtgggtggcGCAGGATGTGACGGCGCGTGCTGGCTGGCTGGGTTCAGTAATAAACTAGTCAAACAAAGGTTTACGaactatttatttaaaaaaaaaaaaa
>XM_039793010.1
ttgtgtttgtgtttccggGTCTCGGAAGATGTTACGACCTCCGTCCGGTTGTTTGCATTTTACGTCGTGATGAGGGTGCGCCAGTGTTTGGTTTCCTGAAGGGAGAAACATCCCAATCTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGCTGGAGTGAACTCGAGGAGGACATTTGATTTTACGTCCATAAAGCGTTTGGCAGTTTGCGGAGAAAACTTCCGGAAGTCCCGTTAACATGGACTCGATCTACAGTGACCACACATACTCGCACTGTTTCAACCATAAAGctTTACCTTCAGATGTCCAGAAAGTGATTGTTGGCAAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACGAAGcacccacacattaaagaggaacaggggGAACTCCGGATCAGTCAGGATAAAGAGCaacttcaagggctggaggaggctgatatcaccaagttcccattcactcctgtccctgtgaagagtgaaaatGATGAGGAGAAACCTCAGttctcacagcttcatcaaagacaaactgAACAGATGGAAACcaaagctgatggagaggactgtggaggaccagaaccagccatgAACTCAGATCCAGATACACATTTACAACCGGATACTGACGAcgagactggagactcttctgaacctgagactgatgacagtgctgattggaaggagaccggagaacctcagtcaggtttaaactctctgaataaTGATGAAGTCCCTGTCAGGGGTTTGAGATGTAGTACTGGTGAGAAAGAGGGTTGGAAAATATTTGGCACCAATGGAcatctgaagagacacatgagatCTCTTACAGCAGCGAAACGATTTAGCTGCTCGgtctgtaagaaagcttttaaACACAGTGGAAATTTAAGtacacacatgagaatccacacaggagagaaacgaTTCAGCTGCTCGgtctgtaagaaagctttttTACTAAGTGGAAATTTACAGAAGCACGTGAGAATCCACACGGGAGAtaaaccatttagctgctctgtATGTACGAAAGCCTTTACATTTAAGCAGGATTTAGATAGACAcctgagaatccacacaggagagaagccatttAGCTGCTCCGTGTGTAAGAAAGCTTTTATACAACGTGGGgatttacatacacacatgagaatccacacaggagagaagccatttAGCTGCTCCGTGtgtaagaaagcttttacagTGAGTGGAACTCTAAAGGCACACATGAGaacccacacaggagagaaaccgttTAGCTGCTCGgtctgtaagaaagcttttaaACGGAATGTAAGTTtacaaaaacacatgaaaatcCACACAGGAGCTCCAGGAGTGGAGGCAGAGAAGGAGAGCAGAGAACCTCATTCAGGCTTAAACAATCTGAAAACAAAAGAATTCTCTAAAAGTGATAAGGAATCTAATACTGTTTGGGTTCCAGGATTTACCGATGTAACATTTTTCCAGGATCCAGTGTTCATACTTTGGTAATGTGTGCGGTATTAACAGTGTGTCCCCACGTGTTTAGAATTGacttgtggtggtgggtggcGCAGGATGTGACGGCGCGTGCTGGCTGGCTGGGTTCAGTAATAAACTAGTCAAACAAAGGTTTACGaactatttatttaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793009.1 True 1846 mRNA 0.44 4 16643643 16658812
XM_039793010.1 False 1681 mRNA 0.45 3 16643642 16658812

Neighbor

gene id symbol gene type direction distance location
trnat-agu_53 NA coding upstream 20566 16623003 ~ 16623076 (+)
trnak-cuu_44 NA coding upstream 20887 16622683 ~ 16622755 (+)
trnas-uga_33 NA coding upstream 141489 16502072 ~ 16502153 (+)
LOC120554222 NA coding upstream 142357 16494132 ~ 16501285 (+)
trnat-ugu_42 NA coding upstream 418815 16224755 ~ 16224827 (+)
LOC120554253 dhrsx,LOC104961879 coding downstream 991 16659803 ~ 16674690 (+)
LOC120554242 NA coding downstream 22216 16681028 ~ 16683511 (+)
trnat-agu_54 NA coding downstream 38235 16697047 ~ 16697120 (+)
trnat-cgu_17 NA coding downstream 39057 16697869 ~ 16697941 (+)
trnat-cgu_18 NA coding downstream 70806 16729618 ~ 16729690 (+)
G235284 NA non-coding upstream 48793 16594198 ~ 16594849 (+)
LOC120554281 NA non-coding upstream 77598 16563427 ~ 16566044 (+)
trnat-agu_52 NA non-coding upstream 120330 16523239 ~ 16523312 (+)
trnak-cuu_43 NA non-coding upstream 120644 16522926 ~ 16522998 (+)
trnat-agu_51 NA non-coding upstream 123247 16520322 ~ 16520395 (+)
G235321 NA non-coding downstream 181374 16840186 ~ 16840829 (+)
G235332 NA non-coding downstream 275987 16934799 ~ 16935666 (+)
LOC120554286 NA non-coding downstream 474304 17133116 ~ 17146492 (+)
LOC120554285 NA non-coding downstream 524543 17183355 ~ 17204668 (+)
G235497 NA non-coding downstream 654197 17313009 ~ 17313865 (+)
LOC120554234 NA other upstream 30971 16388697 ~ 16612671 (+)
LOC120554227 NA other upstream 1601198 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1733567 14806527 ~ 14910075 (+)
G234651 NA other upstream 2498772 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 3440830 13169370 ~ 13202812 (+)
trnat-cgu_20 NA other downstream 97753 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 101546 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 102687 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 103724 16762536 ~ 16762608 (+)
LOC120554243 NA other downstream 221827 16880639 ~ 16932606 (+)

Expression


Co-expression Network