LOC120554247


Basic Information

Item Value
gene id LOC120554247
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16380312 ~ 16386295 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793023.1
AGTAGTGTTTGTGTTTCCGGGCCCCGGAAGATGCTACGACCTCCGTCCCATTGTTTGCATTTTAGCTCGTGTTGAGGACGGCGGGGTAAAAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGTCGGGGAGAAGTTGAGGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGGCTGGACCAGGAGGACACAAAGCCCCCCCACattaaagaagaacaggaggaACTCCGGATCAGTCAGAATgaagagcagcttcaagggctggaggaggctgatatcaccaagttcacattcactcctgtccctgtgaagagcgaagatgatgaagagaaacCTCAGTtttcacagcttcatcaaatgCAAATTGAACAGATcaaaacagaagctgatggagaggattgtggaggaccagaactgGTCATGAAATCCGATCCAGATACAcatttacaaccagagactgatgACGAGACTGGAGATTCTTCTGAatctgagactgatgacagtgctgatttgaaggagaccagagaacctcagtcaggtttaaactctctgaataaTGATGCATTCCCTGTTAGTGATTCAGGATGTACTACCGGTGAGAAAGCAGTTAGCTTCTCTGAGTATGGGAAAAGATTTGGCACCAATGGAGATGTGACGAGGCACATGAGATCTCATACAGGAGAAAAAacatttagctgctcagtctgtaagaaagcttttgGACGGAGTGGTCATTTACAtagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagTGAGTGGAAGTTTAAAGAGACACATGACaattcacacaggagagaaaccatttagctgctcagtctgtaagaaaccTTATACGGAGCGTGCAGCTTTAAAGatacacatgagaatccacacaggagagagaccaTTTATCTGCTCAGTCTGCAAGGACGATTTTAGAGATAAGAAAGGTTTAAAGAtgcacatgagaatccacacaggagagagaccatttagctgctcagtctgtaagaaagatTTTATAGAGAGTGGAACCTTAAAGAGACACATGAGGACCCAACACGAGAGTGTTACAAGCTCCCCCCTTGTTTTGCTTCTCCCTGTCTGCTCTACTCAGGTGATCCTGATTTAATCGTTAGTGGTTGGCTTAAGGAAGGCTGGAGGACTCTTTCAGACTGAAGCAGCTGTgcaccagtttgtttgtttatttatttgggGATTGAGGTCTGAGGGGTATGGCACAAGACCAAGATGAAATTTGGAACTAAATTCATGATATTTGGATATTGTACTATAAATACAGATGTATAAATagtaattgataatgaaataattgaaagagtctatgaaaataaatgtctgGGTGACCACAAACTGTGCTAGAAGCCCCGTATTAAATATCTGTGCATGAAGTTGGCCAGGAGCATTGGTATATTGAACAAAACTAGATACATATTGAACCAGAATACACTACATACTCTGTACTACATGCAGCTACGCTGTAGCTAAAttggaaagagaggactgtgagtttgcagtgaacatgccgtttttttaggtcgggtagagtTGACGCTCGTATGTACCGTAAGTAGAAAGACGTGAGTTTGGCCACTTCTTCGTGACCTTCTTCTGAATGTATTGACTGGAACCCTCTGAAGCGTATACTGCCCCCATCAGATCCGGAAGTGGCGCAGCGCCGATGCTGCTAACACTGGCATCATCGCCAACGGTGCCAACGGTACATAAAAAAATGGGCATTGTCGGTGTTTTATAATTT
>XM_039793025.1
CGTGTAGCGGAAGTAGTGTTTGTGTTTCCGGGCCCCGGAAGATGCTACGACCTCCGTCCCATTGTTTGCATTTTAGCTCGTGTTGAGGACGGCGGGGTAAAAGGCGCCAGTGTTTGGTGTCCTTCCAGAGAGAAACATCCCAAACTGCTGCATGAGGTTTTAAAACCTGAAACGGAGCTACAAAGAGCAgGTCGGGGAGAAGTTGAGGAGAGACACTTCAACATGGACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGCTTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGGCTGGACCAGGAGGACACAAAGCCCCCCCACattaaagaagaacaggaggaACTCCGGATCAGTCAGAATgaagagcagcttcaagggctggaggaggctgatatcaccaagttcacattcactcctgtccctgtgaagagcgaagatgatgaagagaaacCTCAGTtttcacagcttcatcaaatgCAAATTGAACAGATcaaaacagaagctgatggagaggattgtggaggaccagaactgGTCATGAAATCCGATCCAGATACAcatttacaaccagagactgatgACGAGACTGGAGATTCTTCTGAatctgagactgatgacagtgctgatttgaaggagaccagagaacctcagtcaggtttaaactctctgaataaTGATGCATTCCCTGTTAGTGATTCAGGATGTACTACCGGTGAGAAAGCAGTTAGCTTCTCTGAGTATGGGAAAAGATTTGGCACCAATGGAGATGTGACGAGGCACATGAGATCTCATACAGGAGAAAAAacatttagctgctcagtctgtaagaaagcttttgGACGGAGTGGTCATTTACAtagacacatgagaatccacacaggagagaaaccatttagctgctcagtctgtaagaaagcttttacagTGAGTGGAAGTTTAAAGAGACACATGACaattcacacaggagagaaaccatttagctgctcagtctgtaagaaaccTTATACGGAGCGTGCAGCTTTAAAGatacacatgagaatccacacaggagagagaccaTTTATCTGCTCAGTCTGCAAGGACGATTTTAGAGATAAGAAAGGTTTAAAGAtgcacatgagaatccacacaggagagagaccatttagctgctcagtctgtaagaaagatTTTATAGAGAGTGGAACCTTAAAGAGACACATGAGGACCCAACACGAGAGTGTTACAAGCTCCCCCCTTGTTTTGCTTCTCCCTGTCTGCTCTACTCAGGTGATCCTGATTTAATCGTTAGTGGTTGGCTTAAGGAAGGCTGGAGGACTCTTTCAGACTGAAGCAGCTGTgcaccagtttgtttgtttatttatttgggGATTGAGGTCTGAGGGGTATGGCACAAGACCAAGATGAAATTTGGAACTAAATTCATGATATTTGGATATTGTACTATAAATACAGATGTATAAATagtaattgataatgaaataattgaaagagtctatgaaaataaatgtctgGGTGACCACAAACTGTGCTAGAAGCCCCGTATTAAATATCTGTGCATGAAGTTGGCCAGGAGCATTGGTATATTGAACAAAACTAGATACATATTGAACCAGAATACACTACATACTCTGTACTACATGCAGCTACGCTGTAGCTAAAttggaaagagaggactgtgagtttgcagtgaacatgccgtttttttaggtcgggtagagtTGACGCTCGTATGTACCGTAAGTAGAAAGACGTGAGTTTGGCCACTTCTTCGTGACCTTCTTCTGAATGTATTGACTGGAACCCTCTGAAGCGTATACTGCCCCCATCAGATCCGGAAGTGGCGCAGCGCCGATGCTGCTAACACTGGCATCATCGCCAACGGTGCCAACGGTACATAAAAAAATGGGCATTGTCGGTGTTTTATAATTT

Function

GO: NA

KEGG:

id description
K09191 GTF3A; general transcription factor IIIA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793023.1 False 1945 mRNA 0.44 3 16380312 16386284
XM_039793025.1 True 1968 mRNA 0.44 3 16380312 16386295

Neighbor

gene id symbol gene type direction distance location
LOC120554797 NA coding downstream 5347 16374777 ~ 16374965 (-)
LOC120554221 NA coding downstream 14951 16356822 ~ 16365361 (-)
LOC120554198 NA coding downstream 70301 16289101 ~ 16310011 (-)
LOC120553996 NA coding downstream 196419 16176729 ~ 16183893 (-)
trnat-cgu_13 NA coding downstream 412126 15968114 ~ 15968186 (-)
trnat-agu_40 NA coding upstream 477 16386772 ~ 16386845 (-)
LOC120554212 NA coding upstream 24465 16410760 ~ 16854135 (-)
trnat-agu_41 NA coding upstream 70093 16456388 ~ 16456461 (-)
trnam-cau_66 NA coding upstream 114163 16500458 ~ 16500530 (-)
trnat-cgu_16 NA coding upstream 118563 16504858 ~ 16504930 (-)
trnat-cgu_15 NA non-coding downstream 26363 16353877 ~ 16353949 (-)
LOC120554275 NA non-coding downstream 35047 16340797 ~ 16345265 (-)
G235351 NA non-coding downstream 56076 16322888 ~ 16324236 (-)
G235242 NA non-coding downstream 58795 16321111 ~ 16321517 (-)
G235225 NA non-coding downstream 134915 16245127 ~ 16245397 (-)
LOC120554287 NA non-coding upstream 119296 16505591 ~ 16506631 (-)
LOC120554273 NA non-coding upstream 176509 16562804 ~ 16567091 (-)
G235357 NA non-coding upstream 295432 16681727 ~ 16711192 (-)
G235413 NA non-coding upstream 380371 16766666 ~ 16775545 (-)
G235427 NA non-coding upstream 487540 16873835 ~ 16876854 (-)
LOC120554218 NA other downstream 27435 16326093 ~ 16352877 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other downstream 92162 16248694 ~ 16288150 (-)
LOC120554377 LOC103355861 other downstream 1366498 14966316 ~ 15013814 (-)
G234898 NA other downstream 1530575 14847834 ~ 14849737 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 2090269 14194312 ~ 14290043 (-)
G235387 NA other upstream 225688 16611983 ~ 16616316 (-)
LOC120554263 NA other upstream 349891 16736186 ~ 16742288 (-)
trnat-cgu_19 NA other upstream 369698 16755993 ~ 16756065 (-)
G235350 NA other upstream 678007 17064302 ~ 17103517 (-)
s100b LOC103360204,LOC104927403 other upstream 1348436 17734731 ~ 17745257 (-)

Expression


Co-expression Network