LOC120554248 (LOC103366962)


Basic Information

Item Value
gene id LOC120554248
gene name LOC103366962
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 17357447 ~ 17364065 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793026.1
CAGCCAATCATAAAGCCATGAGGCCCGAGGACAGGCTCACACCGGACAGCGTCGCTGCACTggcctctccttctctccaggATGCTCCTCTTCCTCGGCCTGGCCGCCCTCTTCGCCGCGAGCGTCCCCACGGAGACCAACCAGACCTCCAGGCCGCCGGCCGAGAGCGGAGAGCAGTGCATGGCCTGCGACTTCCGGGAGCACAGCAAGCAGATGAGGCTCCACAGCATCAAGTCGCAGATCCTCAGCATCCTGCGGCTCCAACAGGCCCCCAACATCAGCCGGGACATGATCCGCCAGCTGCTCCCCAAAGCGCCCCCTCTGACGCAGCTCCTGGACCAGTACGACCCGCGGGTGGAGGACGAGGACCACGCCACGACAGAGACCATCATCACCATGGCTACCAAGCTTGATCCGACCGCCCAGGAAGAGTTGTCCTCCTGTTGTGTTTTCAACCTCAGCCCGAAGATCCAACCCAAAAACATCCTGCGCGCTCAGCTTTGGGTGCACCTGCGGCCGGCCGACGTGGTCACCACCGTCTTCTTGCAGATCTCTCGCCTCAGACCCGGGAAGGAGGGAAACGGCACCCGGGTCCGAGTCCGCTCCCTGAAGATTGACACCGACGCCGGCTCCGGGTCCTGGCAGAGCATCGACATCAAGTCGCTGCTGCAGGCTTGGCTGCGTCAGCCGGAGGCCAACTACGGGATCGAGATCAACGCCTACGACTCCAGTGGAGAAGATCTGGCTGTCACCTCGGCGGAGCCTGGAGAGGAAGGACTGCAACCGTTCATCGAAGTGAAGATCCTCGACACGCCCAAGAGATCCCGCCGCGACTCGGGCCTCAACTGCGACGAGGAGTCGGCAGAGACCCGCTGCTGCCGCTACCCGCTCACCGTCGACTTCGAGGAGTTCGGCTGGGACTGGATCATCGCGCCCAAGCGCTACCGGGCCAACTACTGCTCGGGGGAGTGCGAGTACATGCACCTGCAGCAGTACCCACATGCCCACCTGGTGAACAAGGCCAACCCGCGGGGCACAGCGGGGCCCTGCTGCACTCCTACCAAGATGTCGCCCATCAACATGCTCTACTTCAACCGCAAGGAGCAGATCATCTACGGAAAGATCCCGTCCATGGTGGTGGACCACTGCGGCTGCTCCTGAGGGAACCCAGGCGTCCGCGGGACGACGGCTCGGTCACAGAAGCtttgtttttctgcaaaagtGATGCAAACTACTCTCTATTTTGTTACTAAAACTTAGACCCAGCAACATCCCGTCTATGAAAGAGACGCAAGGACAGGACTCCCGAAGTTGTTTGAAGTTTCGTACCCTgtgcttttttgttttgccaATTTCAGACCAAACACTCTGAAACAagagatgtttttttctgaaggATCAACTAACTCCTGCCGCTTTCTGTCCTCCCGTCCTTATGAAAACGTGTCCTGATTTGAGCCTTGACCAGAACAAACCCTGCAGGGCGTCTTCCACatgtgcctttattttgaaaaacatgaACCCTTAAATGCCTCCGAGCTGACGGGTCGACCCCGTCCCAAAAGCTTGTTTGCAAACTCCCTCGCTGTGATTTGTTCTCGAGAGAAAGTCAGCAATGTTCTTCCTCTGAGATGGCTGCCCTGtcttaatataataaatgcaTAGTGAGTTGACGACCAGCACAAAGGGAAAAGTGAGAGGCTGAGAGACCTGTCAATCAAGCTAAACTTCTAATCGAATGTTAACGGTACCCCTGTGAGTATAgaatgccgttttttttttttttttcccaatattaaataaa

Function

NR:

description
PREDICTED: growth/differentiation factor 8-like

GO: NA

KEGG:

id description
K04669 TGFBRX; TGF-beta receptor, other

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793026.1 True 1804 mRNA 0.56 4 17357447 17364065

Neighbor

gene id symbol gene type direction distance location
LOC120554209 NA coding upstream 14418 17340047 ~ 17343029 (+)
LOC120554229 NA coding upstream 50509 17289184 ~ 17306938 (+)
LOC120554211 NA coding upstream 89150 17221309 ~ 17268297 (+)
LOC120553999 NA coding upstream 178634 17169385 ~ 17178813 (+)
LOC120554254 NA coding upstream 232541 17113416 ~ 17124906 (+)
LOC120554200 sh3bp4,LOC103360214 coding downstream 411467 17775532 ~ 17807753 (+)
LOC120554264 LOC103360215,LOC103389527,LOC101479567,LOC101064475 coding downstream 471829 17835894 ~ 17836902 (+)
LOC120554001 LOC103375332 coding downstream 824585 18188650 ~ 18238425 (+)
orc4 orc4 coding downstream 1080114 18444179 ~ 18453002 (+)
zeb2b zeb2,LOC103355929 coding downstream 1660083 19024148 ~ 19127654 (+)
G235530 NA non-coding upstream 7361 17349865 ~ 17350086 (+)
G235501 NA non-coding upstream 11524 17345465 ~ 17345923 (+)
G235497 NA non-coding upstream 43582 17313009 ~ 17313865 (+)
LOC120554285 NA non-coding upstream 152779 17183355 ~ 17204668 (+)
LOC120554286 NA non-coding upstream 210955 17133116 ~ 17146492 (+)
G235547 NA non-coding downstream 16840 17380905 ~ 17381200 (+)
G235548 NA non-coding downstream 18790 17382855 ~ 17383085 (+)
G235552 NA non-coding downstream 23566 17387631 ~ 17391423 (+)
G235578 NA non-coding downstream 127206 17491271 ~ 17494315 (+)
G235587 NA non-coding downstream 145428 17509493 ~ 17509695 (+)
trnat-cgu_25 NA other upstream 405678 16951697 ~ 16951769 (+)
trnat-agu_63 NA other upstream 406953 16950421 ~ 16950494 (+)
LOC120554243 NA other upstream 424841 16880639 ~ 16932606 (+)
trnat-cgu_21 NA other upstream 594839 16762536 ~ 16762608 (+)
trnat-agu_56 NA other upstream 595875 16761499 ~ 16761572 (+)
als2b NA other downstream 518400 17882465 ~ 17938311 (+)
LOC120554216 mpp4 other downstream 589074 17953139 ~ 17966226 (+)
G235775 NA other downstream 803221 18167286 ~ 18171954 (+)
G235778 NA other downstream 812760 18176825 ~ 18181812 (+)
anos1a LOC103358938 other downstream 2307807 19671872 ~ 19698895 (+)

Expression


Co-expression Network