LOC120554249


Basic Information

Item Value
gene id LOC120554249
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15985434 ~ 15992736 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793027.1
ttgtgtttgtgtttccggGTCCCGGAAGATGCTACGACCTCCGTTCCATTGTTTGCATTTTAGCTCGTGATGAGGACGGCGGAGTAAAACGCGCCAGTGTTTAGTTTCATACCGAAAGAAACATCAGAAACTACTGCATGAGGTTTTAAAACCTGAAACGGAGTTACAAAGAGCAgCTCTGGAAGAAGTTGAGGAGAGACACTTCAACATGAACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGCTTTACCTTCAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAagcccccacacattaaagaggaacaggaggaactctcGATCAGTCAGGacggagagcagcttcaagggctggaggacgctgatatcaccaagttcccattcactcttgtccctgtgaagagtgaaaatGATGAAGAGAAACCTTATttctcacagcttcatcaaaggCAAACTGAAcagatggaaacagaagctgatggagaggactatGGAAGACCAGAACCAGCCATTAACTCAGATCCAGATACACATTTACAACCAGATACTGATGAcaagactggagactcttctgaacctgagactgatgacagtgctgattggaaggagaccagagaacctcagtcaggtttaaactctctgaataaTGATACATTCCCTGTTAGTGATTCAAGATGTACTACTGGTGAGGACGAGTGTGGGGAAAGGTTTGGCACCAGTGGACATCTGAAGAGACACACAAGATCTCACgcaggagagaaaccatttagctgctcaatctgtaagaaagcttttacagCGAGTGGGagtttacagaaacacatgagaatccacacaggagagaaaccattcAGCTGCTCCGTCTGTAGGAAAGCTTTTATAGATAGTGGGCACTTATAtagacacatgagaatccacacaggagagagaccaTTTAGCTGCTCCGTCTGTAGGAAAGCTTTTATAGAGAGTGGACATTTACAGAAACACGTGAGAACCCACACGGGAGAGagaccatttagctgctcagtctgtaagaaagcttttaaACGGAGTGGAGAGTTACAggcacacatgagaatccacacaggagagagaccatttagctgctcagtctgtaaaaTGGGATTTACAGTGAGTAGAAGTTTAAATAGACACATGAGAGCCCAACACGTGAGTGTTACACAGTCCCCCCCTTGTTTTGCTTCTCcccgtctgctctactgaggTGATCCTGATTTGATTGCTAGTGGGTGGCTCCGCCTCCTGTACTCAAGGCTTCACCAGTGTGTTGGTGGTCCCGACCAGGCTATGGGCCGTTCCGTTaagcactgttattatttaaagttgtgactattattttaataattattcatgtgacagccATTGTTGCTGCTAAATTGCtgtatgaaaactgctgtttgtattgctatattatggcagttgtttgGATACTTAAAAAAAGGCTGATAaagttgcaaatgtgttttaaatggagTCACTGGTGAAGGGCAATATATAAAGTCCTATACATGTCTGTTTCTATAGGGATTCGAACAAGGGCAGACTGCTCAGAAGACCTATACTGCCTTTAATTATTTTAGtcgatttatttctttttgtattctttaacaataaaggaTCATCATGTATGTTACTA
>XM_039793028.1
ttgtgtttgtgtttccggGTCCCGGAAGATGCTACGACCTCCGTTCCATTGTTTGCATTTTAGCTCGTGATGAGGACGGCGGAGTAAAACGCGCCAGTGTTTAGTTTCATACCGAAAGAAACATCAGAAACTACTGCATGAGGTTTTAAAACCTGAAACGGAGTTACAAAGAGCAggtctgttttctttctctgacCGGAAACGTGTTTACTGCTGTTGTTGCAGGGAGTCCGcgcgctaagctaacgttagccgcaGCTAGCTCCTGCTAACGTGTGTTATCGGATATGTTGTGAGCTTCGTATTTTTACTCAAATGCAGCTCTGGAAGAAGTTGAGGAGAGACACTTCAACATGAACTCTGAGAGGAAACTGTCAGCTGGCCAGCGGAGAGATGTCCAGAAAGTGATTGTTGGTGAAGAACATCAGCAGGAGTGGAGCTCCAGTCTGGACCAGGAGGACACAAagcccccacacattaaagaggaacaggaggaactctcGATCAGTCAGGacggagagcagcttcaagggctggaggacgctgatatcaccaagttcccattcactcttgtccctgtgaagagtgaaaatGATGAAGAGAAACCTTATttctcacagcttcatcaaaggCAAACTGAAcagatggaaacagaagctgatggagaggactatGGAAGACCAGAACCAGCCATTAACTCAGATCCAGATACACATTTACAACCAGATACTGATGAcaagactggagactcttctgaacctgagactgatgacagtgctgattggaaggagaccagagaacctcagtcaggtttaaactctctgaataaTGATACATTCCCTGTTAGTGATTCAAGATGTACTACTGGTGAGGACGAGTGTGGGGAAAGGTTTGGCACCAGTGGACATCTGAAGAGACACACAAGATCTCACgcaggagagaaaccatttagctgctcaatctgtaagaaagcttttacagCGAGTGGGagtttacagaaacacatgagaatccacacaggagagaaaccattcAGCTGCTCCGTCTGTAGGAAAGCTTTTATAGATAGTGGGCACTTATAtagacacatgagaatccacacaggagagagaccaTTTAGCTGCTCCGTCTGTAGGAAAGCTTTTATAGAGAGTGGACATTTACAGAAACACGTGAGAACCCACACGGGAGAGagaccatttagctgctcagtctgtaagaaagcttttaaACGGAGTGGAGAGTTACAggcacacatgagaatccacacaggagagagaccatttagctgctcagtctgtaaaaTGGGATTTACAGTGAGTAGAAGTTTAAATAGACACATGAGAGCCCAACACGTGAGTGTTACACAGTCCCCCCCTTGTTTTGCTTCTCcccgtctgctctactgaggTGATCCTGATTTGATTGCTAGTGGGTGGCTCCGCCTCCTGTACTCAAGGCTTCACCAGTGTGTTGGTGGTCCCGACCAGGCTATGGGCCGTTCCGTTaagcactgttattatttaaagttgtgactattattttaataattattcatgtgacagccATTGTTGCTGCTAAATTGCtgtatgaaaactgctgtttgtattgctatattatggcagttgtttgGATACTTAAAAAAAGGCTGATAaagttgcaaatgtgttttaaatggagTCACTGGTGAAGGGCAATATATAAAGTCCTATACATGTCTGTTTCTATAGGGATTCGAACAAGGGCAGACTGCTCAGAAGACCTATACTGCCTTTAATTATTTTAGtcgatttatttctttttgtattctttaacaataaaggaTCATCATGTATGTTACTA

Function

GO: NA

KEGG:

id description
ko03420 Nucleotide excision repair
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793027.1 False 1709 mRNA 0.44 3 15985434 15992736
XM_039793028.1 True 1842 mRNA 0.44 2 15985434 15992736

Neighbor

gene id symbol gene type direction distance location
trnas-uga_32 NA coding upstream 34628 15950725 ~ 15950806 (+)
trnas-uga_31 NA coding upstream 37094 15948259 ~ 15948340 (+)
trnas-uga_30 NA coding upstream 39560 15945793 ~ 15945874 (+)
trnas-uga_29 NA coding upstream 42030 15943323 ~ 15943404 (+)
trnas-uga_28 NA coding upstream 44491 15940863 ~ 15940943 (+)
LOC120553995 NA coding downstream 7554 16000290 ~ 16033713 (+)
trnak-cuu_19 NA coding downstream 50278 16043014 ~ 16043085 (+)
trnat-agu_18 NA coding downstream 50592 16043328 ~ 16043401 (+)
trnat-agu_19 NA coding downstream 51599 16044335 ~ 16044408 (+)
trnak-cuu_20 NA coding downstream 54310 16047046 ~ 16047118 (+)
G235152 NA non-coding upstream 101424 15883763 ~ 15884010 (+)
LOC120554272 NA non-coding upstream 301944 15676977 ~ 15683490 (+)
G235074 NA non-coding upstream 318078 15666872 ~ 15667356 (+)
G235056 NA non-coding upstream 370881 15614216 ~ 15614553 (+)
LOC120554283 NA non-coding upstream 418871 15563750 ~ 15566563 (+)
LOC120554276 NA non-coding downstream 132725 16125461 ~ 16126791 (+)
G235185 NA non-coding downstream 202826 16195562 ~ 16195700 (+)
G235216 NA non-coding downstream 228684 16221420 ~ 16222735 (+)
G235243 NA non-coding downstream 330105 16322841 ~ 16324248 (+)
trnat-agu_42 NA non-coding downstream 513885 16506621 ~ 16506694 (+)
LOC120554227 NA other upstream 942990 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1075359 14806527 ~ 14910075 (+)
G234651 NA other upstream 1840564 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 2782622 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 2959914 13002963 ~ 13025520 (+)
LOC120554234 NA other downstream 395961 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 763829 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 767622 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 768763 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 769800 16762536 ~ 16762608 (+)

Expression


Co-expression Network