LOC120554302 (ube3a)


Basic Information

Item Value
gene id LOC120554302
gene name ube3a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14545740 ~ 14569910 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793117.1
gcagtgcattgtgggacGTGGGTTGATGGTGAAGTCAAGATGGCTGTGAACCTCAAGCAGAGGAAGGAGCCTGCTGTAGAAAGGCCGTGAATGAAGTTTTGAATAACAAATTCTTCGTCGCTGCCTGTTTAGACTTAAACCGTCGTGCTGTTGAAGTTGTAGTCAACCTGTGGAGGACTTGATACATTCACAGACAGCAACAAAATCTCAAACAACTGAGGATAAAGTCTCGTATGAATTCCGACGAGAAGGAGGACTGTGAGTGTGCGCCACCACAGGCCGAGACTAGCCCCACAGGAGGACCATATAGAGAATACGAGGAGCCTGAAATAGAAAACCCAGAAGCAAGCCGAATGAAGCGAGCAGCTGCCAAACATCTAATAGAGCGCTATTACCACCAGTTAACTGAGGGCTGTGGGAATGAGTCGTGCTCCAACTCCTGGTGTGCCTCATCAGTCGGCTTCAACCGCATGGATAACAACGCAGCGGCGGTCAAAGCCTTGGAGCTCTACAAGGTCAACGCTAAGCTATGTGACCCCCACCCCTCAAAGAAAGGCACTGCCTCAAACTACCTAGAGAGCAGTGCTCACAGCAACTCAGACTGCGGCAACAGGAAGTTGAACCATAAAGATGTCCACTCTGTACGGGACAATTTCAAAGATGTAAATTACCTGACAGAGGAGAAAGTGTATGAGATCTTGGACATCTGTGGAGAGAAAGAAGATTACTCGCCTCTGATCAGGGTAATAGGTAGGGTGTTCTCCAGTGCTGAGGGCCTGGTGCAGAGCTTCCGGAGGTCCAAATCTCACACTAAGGAGGAGCTCAAGTCCCTCCAAGGTAAGGATGAGGACAAGGATGAGGATGAGAAGGAGGCTGCTGCCTGTTCCGCTACAGCTATGGAGGAGGACTCCcctgcctcctcttcatcatcaagGCTCGGAGAGGGCTCCTCAGGGGAAAATGATGTCCAAAAGCTGTCCCCTGATGAGGTGTCGGTGGACATTGAAGCAGTGCGGCGGGTCTACGAGCGCCTGCTCTCCAATGAGAAGATAGAAGCCGCCTTCCTGAATGCGCTGGTCTACCTCTCACCCAACGTAGAGTGTGATCTGACATACCACAATGTGTACTCACGAGACCCAAACTACCTGAACCTGTTTGTTATAGTGATGGAAAACAGCAACCTCCACAGCCCAGAGTACCTGGAGATCGCCCTCCCGCAGTTCTGCAAGGCCATGAGCAAACTCCCACTGGCAGCTCAGGCCAAGTTGGCAAGCTTGTGGTCACACTACAGCGCAGGGCAGATTCGGCGCATGGTAGAGACCTTCCAGCAGCTCATTACCTACAAGGTGATCAGTAACGAGTTCAACAGCCGCAACCTGGTCAACGATGATGACGCAGTAGTGGCGGCCACCAAGTGCTTGAAGATCGTCTACTATGCAAACGTGCTGGGCGGCGACCTAGATGTAGAGCACAACGAGGATGAGGACGAGGAGCCCATCCCAGAGTCTAGTGAACTTACCCTGCAGGAGTTGCTGGGCGAGGAACGGCGGAACAAGAAGGGCCCTCGGGTGGACCCGGTGGAGACGGAGTTAGGGATCCGCACAAACGATTGCAGACGGCCACTCATTGTCTTTGAGGAGTTTGTCAATGAGCCTCTAAACGAGGTGCTGGAGATGGACAAGGACTACACTTTCTTTAaggttgaaactgaaaacaagTTCTCCTTTATGACCTGCCCCTTCATCCTGAATCCCGTCACCAAGAACCTGGGCCTTTACTACGACAACCGCATCCGCATGTACAGTGAGCGGCGTATAACTGTGCTCTACAGTTTGGTGCAAGGTCAGCAGCTCAATCCCTACCTGAGGCTCAAAGTGCGGCGAGACCACATCATTGACGACGCTCTGGTCAGGCTTGAAATGATAGCAATGGAGAATCCTGCAGACTTGAAGAAGCAGCTGTATGTGGAGTTTGAAGGAGAGCAAGGTGTTGATGAAGGAGGCGTTTCCAAAGAGTTCTTCCAGCTGGTGGTGGAGGAGATCTTTAATCCAGATATTGGCATGTTCACATACGACGAGCGCACCAAACTGTTTTGGTTCAACTCGTCATCACTCGAAAATGAGGGCCAGTACACTCTGATTGGCATCGTTCTTGGTCTGGCCATCTATAACAACTGTATTCTGGATGTCCACTTTCCTATGGTGGTCTACAGGAAGCTGATGGGCAAGAAAGGAACTTTCAGGGACTTGGCTGATGCCAACCCGGTTCTATACCAGAGTCTGAAGGAGCTGCTGGAGTATGAGGGCAGCGTGGAGGAGGACATGATGATCACTTTCCAGATTTCCCAGACAGACCTGTTTGGGAACCCACTCATGTATGATTTAAGGGAAAATGGGGACAAGATTCCAGTcacaaatgaaaacagaaagGAGTTTGTGGCTCAGTATGCAGAATACATGCTGAACAAAAGTGTGGAGAAGCAGTTCAAAGCTTTCAGGAGAGGCTTCCACATGGTCACCAACGAGTCTCCACTCAAATACCTGTTCAGACCAGAGGAAATCGAGCTCCTGATCTGTGGAAGCAGGAACCTGGACTTCCTAGCACTTGAAGAAACAACAGAGTATGATGGAGGTTACAACAGAGATTCTCGAATCATCAAGGAGTTTTGGGAAACGTTGCATTCGTTTGGTGAGGAGCAGAAGCGTTTCTTCCTGCAGTTCACCACCGGCACTGACAGAGCACCTGTGGGTGGGCTGGGCAAGCTGAAGATGATCATTGCCAAGAATGGCCCTGACACTGACAGGTTACCGACGTCTCACACTTGCTTTaatgtgctgctgctgccagagTACAGTAGCAAGGAGAAGCTGAGGGAGAGACTGCTGAAAGCCATCACCTATGCCAAAGGGTTTGGCATGCTCTGAGCCCCTGCTCCAAACACACAGCAAAACGGACTCCTTCTCAGAAAGCCCATCAAACCCTGCTCTGCCCTTCCTTTatcaaaaggtgacaaaagacAGACCAGAGTATGTTTTGAGGAAAAGCAAGTCAATAATGAAAGAGGAGAAATGGTTCCAATAGAGCGCTCCAGTAGTTCTTCTACTGTGCCTGCATCATCCCACATCAGTCAGTGTAAGCACAGAGACCTCCTGATCAAAATACCCACCCCCACATCCACATTATGTGAATGTGCAGCagcctccctttttttttttttttttttttctttgtacagAGAGAATCATTtccttattatttattttaaggttAAAATGGGTTATTTTTCATGCCTGCCTGTTGTGATAGCTTCCTTACTTGGGAAAGGGGAAGGGTTATTATTAAACTGTAAATTTGGGACGATGCATTAACAAGTCAATATCAACcccattgaagaaaaaaaaaaaaatgtgttaaagTAGACCTGACCTTGTTCATAGACAATTGACAGAGATAATCTAGTTTTAGACTAGTCTTTACTACAAAATATTGTATTCCCAACAGAAGAAAGAGCTCTCGCTGACCATTCCACTCACAGCCATCGGCTATTGATTCTATCTAGTCCAAAATGGCACATTATGAAatagctgtttttattttttggccttttttcCTGGGGGGGGGGAACACACCGCAGGTTAGACTAAAATCTTGTCAGAGCTGTGTAAGTGCACTTAGACATTTtcagaatgtttgtttttttggctacAGGTTGCCATGATTGTTTGAAGCATTTTATTTCCATGTCTTCCTGTGTTGACAATtctaaataaaaacagtatttaTACATCAGTGCGGTTGGAACTACGATACCGTATTCTGCACGTTTTGGAGGATgtacacatgtagaccggtcaCTGATGATGTTCTCAGATCCAGGCATAGAACTCTTCTTGTGCCAACCTAGTCTCACACTGCAGAGTCTCTGTTCAATATAACTTCAATTTATCTGGAACTCCACATGTAGAGTCAAGAAAACAGTGTGTACTGGCAAAGCTTTGGTAGCTTGTGATCTTAAGTCCATTTGGCCTTAGTCTCAAGGTTGTGGTTACAACTGTCATTTTAATGCATCATGAATCTTCTGACAACACGACAAATGACCTGACAGGCCGACGTGTTTGTATTCACATTGCCATGCCAGATGGATGGCACTGTGATCGGACACTGGGCAAGTGAGGTCAGTAGTCTAAGCACAATCTGAACAAACTAATTGTTGTGTAAAGCTGCAATCCAGGGTCAGTCAATCCTGTAGCCACTGAGTCTCAGATAAGCCCCTGATATGTTCCTATCAGTCCTTCCTTTGCTGTTAGACCCACAATGGAAAATAATATCAGTGTAAGTGTATGGTTTGATCTGATCTCTCACTGATATATGCTTATGAGAGAtgggaaaacatttaaagaaaatattaaattttgTGAAATGTGCTTGTTCGGCATGTTATCCACCATTAAGTAGGGGATGAATTTAAATGTCATCTCGTTTGCATCCAGTTGAACGTATCTTAAAGATTGTAAGCAGGCAAAAAACAGTTAACCTAGTTCTGTAGAACAAAAATCCACATTCTATAGCTGTCACATTGTATCTTTTAGTATAACATTATGTAGCAAGGCTAGGCTAACTGTGATCCCCTGCTCCCAGTCTTTGTTCAAAGCTAGGATAAACATGTCCTGGACCTATGTACTGCTGTACTGAATGCACAGAGATGACATTGATATTCTCTGACTCTGGGGGAGACTGTACTGTGTGGACACATCACTGTGATCAGATTTACGTATATTTGGATTTGTCACATTCAATGAGAGTGAAAACAGCTGTAACCAcggtctttttttctgttcaacATTAATTGGAATATCAACTGTGAAATCATCCTCCCACAGATCAGGCCAATTGTTTGATAGTTCTGTTTTTGTCCAGTTGAATACCTGTAAAGAACTTGAGTAATGTCTGCATGGTGTTCTTGCACACAGACTATACTGACACTGTCGATAGAGTACATAAGGGAAAAGCATCGTCAGCCACCCGAACGGGTTTAAACGGTACAGTTTAACCAAATCAAACCacttatttgaaaataaaatggactCCCCTGAAATATAAATTTTAGCAGTTTGTTGCGTTTTGCTCACCCAGTAACTATGGTAAGTATGGTAGGTCACTGTGCATGTCCTTTTTAAAGGTGTTTATACATGTATACCCACATACATTACAGCCAATCCTTTTGCAAACCTTTGACATTTAAATTATTTCTACCATTCCGTGCATCCAGTAAAATATGAAGATCAATTAGAGTTTTGAGAAGAGTAAACATCGAGTCTGCAATACTTTTTGTTCAAGTTAATCATTCTAGGGCAGTGCAGTTTATCATTCACAAGCCAGACTTTAATTAAGACTGACAACACAGATTTCATGTTCATTTTGATAGAGTACACAACTCGTGCACATTTCAAGAGTCTGCTTATAGAGTTTCATATTGGGTGGAAATGAATGTAAGTAATGGAGTGAAAAATACATCCTAAAAACTCAAACTATAGCATACATTTGAACATGGGAATCAAAAATGTAAAGTATACACTAAAACATGACtaaaaattttataaaataaatgtacctttttgttttacttccAAATAAGTGGTTGAGATGATTTGGGAAAAATATGCCCTGCAGactgctgtaaagctgtcttaACAGTGTCCCCCCAGCTTTAGATTTGCTATTAAATCGTATAGCATTTATATTAAAGTCCACTTACTAACCTTTCAACCACATCTCATAGTCCTCATCAGTAAATGAAGCTGGCTCAGGTGGACATCACTTGACCTACATATGGATCTTCAATTACGGGATACCAAGTTGTCTTACATGGGAGGGAGATGGTAACCCCTGTCTCTGTTCCAAGATGGTTTTTGGTGTAGAATGTGAATGTCCTCCATGATCTTTATCTAACTATTTCGGTTTTAATGTCAAGGACCTTTAAGAGACTGAATGAACACCAGAAACGGGCAACATCAACTGTCTGCGAACAGACCAAAACCATTCACAGCATCCACTGGGAAGAGGTCCAAGGTCTTGGACCAGGAGTCACTGGACAGCTGGAGAAAGACATTCACATCTGACACCACAGACCATATTTGAACAGAGACAGAGCTTACCATCTCTGCCCATATAAGACCACCTGTTATCATGCAACCAAAGTTATTTTCTCTGGTCACATCACTACACCTTAGCCAGCTTGATAACAACTGAGCAAACTACATCCATTGATGAAAACCAAgagatgtggttgaaagctcCTGGAAACTATTGATTGGAGagtaaagatttttttgttgagccagattattattatgtctttcatttaaaaaacagttttggTATATTCAAAGGACTACAACTTTGTTGCTGATGGTCATTGACAAGTTGTTCAGAGCAGAGTGGTGTTCTGTGTGTTGTCCTGGGCTATTCAGTAGTGGTTGTTGGTATGTATTGTCTTTGGAGATTGAATCTGTGACTTCTCACGCTGTCTAACTATGAGGTTCCTGCTGTGCTGGTGATGTGTCTTTAAAAGGAccgtcttctttttttctttttttttctttaaacacTGCACAATTTGTGAGCGCGATGGTGCCCACAACATACCACTAAACCACAGTGCTGAGACCACAGCAGTACACAACAACCCTGAGCCATTCCGTCTGTTCCATTGCTCTTACTTTCTCATTGGACCTGGGCAAAATGTTGTTGGAGAATACTTTTCATTGCTTGTTTTTAGCCTTTATTGAAGTTACTTTGGACAGTACATGGAGTCTCTGGAAATGTGGACAAACCGTGAACTGGGTTGGAAAGTCAcaacagtatactgtatgtttgtgcgATTAACGACTTAGCTGGCATTGTTATACTGCAGTAACCTCGATCATGTGAAACTGTGTATGTTAAAACAAAGGTTAAGGATTACTTACAACTGTTTTGAGCCCAGGTCTGGTTTTAGCTGTTTAACGTTACTTTGTACCTCCGTTTTGTAATGCTGAAGATGCTTACATGGACATGTGAAAGGGCTCTAAAGGCTTGTAAAGGTAAAAGGTGAAAGGTCAACCTGATTTTGGAAAGGGAAGCAGTTTTCATTCATTGGTTTGACTTAACAGTTCCATTCTAAAAGATACAAACTGATGAAAGGCAACAAGTATTCAGTGCTGTgaaaacatgctaaataaaGATGACAGCTTTTTTCCAACTTG

Function

symbol description
ube3a Predicted to enable ligase activity and ubiquitin protein ligase activity. Predicted to be involved in protein K48-linked ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome complex. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).

NR:

description
PREDICTED: ubiquitin-protein ligase E3A

GO: NA

KEGG:

id description
K10587 UBE3A, E6AP; ubiquitin-protein ligase E3 A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793117.1 True 7244 mRNA 0.44 11 14545740 14569910

Neighbor

gene id symbol gene type direction distance location
LOC120554074 ddrgk1 coding downstream 99644 14434308 ~ 14446096 (-)
atg3 atg3 coding downstream 125749 14400865 ~ 14419991 (-)
slc19a2 slc19a2 coding downstream 146370 14356830 ~ 14399370 (-)
LOC120554388 NA coding downstream 246050 14290673 ~ 14299690 (-)
gtf3c3 gtf3c3 coding downstream 458258 14010265 ~ 14087482 (-)
LOC120554575 NA coding upstream 31245 14601155 ~ 14614899 (-)
chrm4a LOC104937647,LOC103355860,LOC100699420 coding upstream 308648 14878558 ~ 14924344 (-)
gucy1b2 LOC103355875 coding upstream 365810 14935720 ~ 14963971 (-)
trnar-ccg_4 NA coding upstream 392451 14962361 ~ 14962433 (-)
LOC120553991 NA coding upstream 522294 15092204 ~ 15098640 (-)
G234802 NA non-coding downstream 3420 14537841 ~ 14542320 (-)
LOC120554079 NA non-coding downstream 61711 14477426 ~ 14484029 (-)
G234752 NA non-coding downstream 189340 14356095 ~ 14356400 (-)
G234736 NA non-coding downstream 248363 14297080 ~ 14297377 (-)
G234676 NA non-coding downstream 355502 14190031 ~ 14190238 (-)
G234828 NA non-coding upstream 29226 14599136 ~ 14600286 (-)
G234896 LOC103355859,LOC104964875 non-coding upstream 236722 14806632 ~ 14828409 (-)
G234927 NA non-coding upstream 517040 15086950 ~ 15087401 (-)
LOC120554280 NA non-coding upstream 619848 15189758 ~ 15190653 (-)
LOC120554270 NA non-coding upstream 738598 15308508 ~ 15309289 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 255697 14194312 ~ 14290043 (-)
G234405 NA other downstream 1591615 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 2252597 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 3007419 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 3056263 11458937 ~ 11489477 (-)
G234898 NA other upstream 277924 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 396406 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 1678784 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 1756183 16326093 ~ 16352877 (-)
G235387 NA other upstream 2042073 16611983 ~ 16616316 (-)

Expression


Co-expression Network