LOC120554303 (LOC107101608,LOC103355870,LOC103477065,LOC106935410,LOC107832892,LOC106932269)


Basic Information

Item Value
gene id LOC120554303
gene name LOC107101608,LOC103355870,LOC103477065,LOC106935410,LOC107832892,LOC106932269
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14531790 ~ 14544618 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793118.1
tCAAGATAAAATTACCTCCTTTTGTTCCCTCTGCTCCACTGCCGCCTTTTTGGGGGAACACATAAGAGGACATTCTATCTTAAACACCATCCATCAAACTTTGGAAACCAACAATCACAATAACGtgtcacacacactgtatatacataATAGTTATGTGGTATTGTCGTAAAAGTTGTAAGATGGATAGACATATGCTAGATTGGGAACAATTTAATTTCCTCCCAATTTAGAGCAACTAAATGTGATGTGTTGCCCACCCACATTTTTTTATGGAGTTTCTCCCACCATACTCCCCATTCCTAAATCCCATTGATTATTGATCCCATTGACTCTTTTCTGCATGGAGATGGAGGGTATATGATTACCGTCCTCACAACCAGTTGTTACGGTGACCGAGACGGTTCAACACAAATTCAAAAGCGACAACAGAAGTGAGCGTGTTGTTGACAAAAAGAGGAAAGTTCTTGTATGTTTGAGAAGCTGATGGACACCCAGGATCAGACATCTTTAGTGGGGGCAGGACTGCTGTCCAGGCTGACGCACATGATGCACTTTGGGAGGAGTAGAGTTGGGCCTGCAGAGTCCAGCCTCAGCagccagaggacagagaacaacaTGAGGAGCAGGAGCAGTGATGGTCAGCTAGCCCTGGCTGCACAAAACATGAACAACTGCAACAACAATGATGGtaaaaaagaTGCCAAGAAAGAGGAACCTAAAAAGGATGATAAGAAAGATGACAAGAAAGATGACAAGAAAGATGACAAGAAAGATGCTAAAAAGGAAGAACCAAAGCAGGTGTGGATCATGGACCCTGCCACAGATACATACTATTACTGGCTGTGCACAATATCCATCCCAGTGTTCTACAACCTTATGTTCCTAGTGGCCAGGGCTTGTTTTAATGACCTGCAGTATACAAATACAACGCTGTGGATGGTTTTGGATTACTCTTCCGATGTCCTCTACTACATTGACACCTTTGTGAGAGCCAGGACAGGTTATCTGGAGCAAGGTCTTCTTGTAAAGGATGAGAAGGTCCTGAAAGAAAAGTACATGAAGACACACCAGTTCAAATTTGACATTATATCAATTATTCCCACAGATTTTATATTTCTCATAATTGGAATTGACAACCCAGAGTGGCGATTCAACCGTCTCTTTAGGTTAGCCCGTCTTTTTGAGTTCTTTGACCGGACTGAAACTCGAACAAATTATCCCAACATCTTTCGAATTGCTAATCTTGTACTTtacattatcatcattatcCACTGGAATGGTTGCCTTTTCTTTGCCATCTCCAAGACGCTTGGCTTTGGCTCAGACACCTGGGTATATCCAGACCTAAAGACGCCTCAGTATTCTCGCCTGTCCAGGCAGTACATCTACTGCTTTTACTGGTCCACTCTTACTCTGACAACTATCGGTGAGACACCGCCCCCAGTCCGAGACATTGAATACTTTTTTGTGGTAGCTGACTTCCTCACTGGGGTTCTGATCTTTGCTACGATTGTAGGCAATGTTGGGGCCATGATTTCCAACATGAGTGTTGCACGTGTAGAGTTCCAGGCTAAGATTGACTCTATAAAGCAATACATGCAGTTTCGGAAGGTCACCAAAGACCTGGAGGTTAGGGTGGTAAAGTGGTTTGACTACCTGTGGACAGAGGAGAAAACCTGTGATGAGAAGCTGGTGCTGAAGAACCTGCCAGACAAGCTAAAGGCTGAGATAGCCATCAATGTACATCTGGAGACTCTAAGTAAAGTGCGCATCTTTCAAGACTGTGAAGCAGGTTTGCTTGTTGAGTTGGTCCTTAAACTTCAGCCTCAAGTTTTCAGTCCTGGTGACTACATCTGTAAGAAGGGGGACATTGGCAGGGAAATGTATATCATCAAAGGAGGTAAGCTGGCTGTGGTAGCAGATGATGGGGTTACCCAGTTTGTGGTCCTAAGTGATGGGGCATACTTTGGAGAAATTAGTATCCTCGGTATCAAGGGCAGTAAGGCAGGAAACCGAAGAACAGCCAACATCCGAAGTGTGGGCTACTCTGATCTGTTTGCACTGTCCAAAGATGATCTAATGGAGGCACTCACTGAGTATCCTGATGCTAAAAATATGCTGGAGGAGAAGGGAAGGGCCATCCTGATGAAAGATAATCTCATTGATGAGTCACTGGTCAATGCTACTGACGCCAAAGACTTGGAGGAAAAAGTCAACAAGATTGAAGCCAGTTTGGATGTCATGATGGTTAAATTTCAAAGGCTGACAAACCAGTATGAATCTTCCCAGCGTAAAATCAAGCAACGGCTCATTAATGTGTCGAACCAGGTCCGAACACTCAGAGTAGACAATGAGTAGATCTTGGCTTTGCACTACTACTGCCAGTCTTATGGAATGTTCAGGACATATGTTAAAGGTCATCTGTTCTGTAGGACTTTTTGTATACACCAAATGGCATATGATCAGCAGCTAAACAGTCAACATTCATTTTCCCCATATATGGTCAAATAGAAAGGTTGCCTTGAAAGTTTACCATCCTCATAAACACAGATATTCAGAGCTGGCTGGGTACCTCAATACTTAATAAGTATTAACTGAATTGTGTCCCTACTGAGTGTCAAAAAACTGAGTCCTGTTTACAACCTTTAAACAGGTTTTCTCTGATAATTTACTTGCTCTACTGGCTTGATTggttaaattacaaaaaagttTTTTCAATGAGTAACAAAAGGCAACAAATAAGGTACCAATTTGGTCTCAGAACTAAAATTTGTCTTACTATTGCACCTGTCATTTCAATAATCCAATACATATTCGTAATACAACTGTCAATTTGCCTAGATCTTCAGTAAAATGCAGTTTCTCCCACACTGACCAAAATTTAACAGGTACGTGATTGAACAAAATACTATGCTTTTTCATTATCATTTGTGATATTTGCAGCATGATTTAGTGTCCTGGGTCTGTTTTTCAAAAACTGTTTCAAATAAACCGCTTTGAAGTCA
>XM_039793119.1
GATTGGATAAACAGAAGGAACTCCTCAACAGCAGGGGGACAAGATCTTGTCCACAGAAAAGCACAAGTGTTGTTTGCTCCTTTGACTTGAGTTAGAAGACAGATATTAACTCCAGGATCTATATATATCTGAACTGAACTGAGCTCGCCTGTCAGTCTAATGTTCGATGTGAAAATGGAAGAACAAATAAGGAGCAATTTGGGATTCATGCAGAGCTCACCCCGACTTCTCCTCGCTGTCTGAActgctcatcatcatcactcaCATTCAGGCTGATGGACACCCAGGATCAGACATCTTTAGTGGGGGCAGGACTGCTGTCCAGGCTGACGCACATGATGCACTTTGGGAGGAGTAGAGTTGGGCCTGCAGAGTCCAGCCTCAGCagccagaggacagagaacaacaTGAGGAGCAGGAGCAGTGATGGTCAGCTAGCCCTGGCTGCACAAAACATGAACAACTGCAACAACAATGATGGtaaaaaagaTGCCAAGAAAGAGGAACCTAAAAAGGATGATAAGAAAGATGACAAGAAAGATGACAAGAAAGATGACAAGAAAGATGCTAAAAAGGAAGAACCAAAGCAGGTGTGGATCATGGACCCTGCCACAGATACATACTATTACTGGCTGTGCACAATATCCATCCCAGTGTTCTACAACCTTATGTTCCTAGTGGCCAGGGCTTGTTTTAATGACCTGCAGTATACAAATACAACGCTGTGGATGGTTTTGGATTACTCTTCCGATGTCCTCTACTACATTGACACCTTTGTGAGAGCCAGGACAGGTTATCTGGAGCAAGGTCTTCTTGTAAAGGATGAGAAGGTCCTGAAAGAAAAGTACATGAAGACACACCAGTTCAAATTTGACATTATATCAATTATTCCCACAGATTTTATATTTCTCATAATTGGAATTGACAACCCAGAGTGGCGATTCAACCGTCTCTTTAGGTTAGCCCGTCTTTTTGAGTTCTTTGACCGGACTGAAACTCGAACAAATTATCCCAACATCTTTCGAATTGCTAATCTTGTACTTtacattatcatcattatcCACTGGAATGGTTGCCTTTTCTTTGCCATCTCCAAGACGCTTGGCTTTGGCTCAGACACCTGGGTATATCCAGACCTAAAGACGCCTCAGTATTCTCGCCTGTCCAGGCAGTACATCTACTGCTTTTACTGGTCCACTCTTACTCTGACAACTATCGGTGAGACACCGCCCCCAGTCCGAGACATTGAATACTTTTTTGTGGTAGCTGACTTCCTCACTGGGGTTCTGATCTTTGCTACGATTGTAGGCAATGTTGGGGCCATGATTTCCAACATGAGTGTTGCACGTGTAGAGTTCCAGGCTAAGATTGACTCTATAAAGCAATACATGCAGTTTCGGAAGGTCACCAAAGACCTGGAGGTTAGGGTGGTAAAGTGGTTTGACTACCTGTGGACAGAGGAGAAAACCTGTGATGAGAAGCTGGTGCTGAAGAACCTGCCAGACAAGCTAAAGGCTGAGATAGCCATCAATGTACATCTGGAGACTCTAAGTAAAGTGCGCATCTTTCAAGACTGTGAAGCAGGTTTGCTTGTTGAGTTGGTCCTTAAACTTCAGCCTCAAGTTTTCAGTCCTGGTGACTACATCTGTAAGAAGGGGGACATTGGCAGGGAAATGTATATCATCAAAGGAGGTAAGCTGGCTGTGGTAGCAGATGATGGGGTTACCCAGTTTGTGGTCCTAAGTGATGGGGCATACTTTGGAGAAATTAGTATCCTCGGTATCAAGGGCAGTAAGGCAGGAAACCGAAGAACAGCCAACATCCGAAGTGTGGGCTACTCTGATCTGTTTGCACTGTCCAAAGATGATCTAATGGAGGCACTCACTGAGTATCCTGATGCTAAAAATATGCTGGAGGAGAAGGGAAGGGCCATCCTGATGAAAGATAATCTCATTGATGAGTCACTGGTCAATGCTACTGACGCCAAAGACTTGGAGGAAAAAGTCAACAAGATTGAAGCCAGTTTGGATGTCATGATGGTTAAATTTCAAAGGCTGACAAACCAGTATGAATCTTCCCAGCGTAAAATCAAGCAACGGCTCATTAATGTGTCGAACCAGGTCCGAACACTCAGAGTAGACAATGAGTAGATCTTGGCTTTGCACTACTACTGCCAGTCTTATGGAATGTTCAGGACATATGTTAAAGGTCATCTGTTCTGTAGGACTTTTTGTATACACCAAATGGCATATGATCAGCAGCTAAACAGTCAACATTCATTTTCCCCATATATGGTCAAATAGAAAGGTTGCCTTGAAAGTTTACCATCCTCATAAACACAGATATTCAGAGCTGGCTGGGTACCTCAATACTTAATAAGTATTAACTGAATTGTGTCCCTACTGAGTGTCAAAAAACTGAGTCCTGTTTACAACCTTTAAACAGGTTTTCTCTGATAATTTACTTGCTCTACTGGCTTGATTggttaaattacaaaaaagttTTTTCAATGAGTAACAAAAGGCAACAAATAAGGTACCAATTTGGTCTCAGAACTAAAATTTGTCTTACTATTGCACCTGTCATTTCAATAATCCAATACATATTCGTAATACAACTGTCAATTTGCCTAGATCTTCAGTAAAATGCAGTTTCTCCCACACTGACCAAAATTTAACAGGTACGTGATTGAACAAAATACTATGCTTTTTCATTATCATTTGTGATATTTGCAGCATGATTTAGTGTCCTGGGTCTGTTTTTCAAAAACTGTTTCAAATAAACCGCTTTGAAGTCA

Function

NR:

description
PREDICTED: cyclic nucleotide-gated channel cone photoreceptor subunit alpha-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005216 ion channel activity molecular_function

KEGG:

id description
K04950 CNGA3; cyclic nucleotide gated channel alpha 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793118.1 True 3008 mRNA 0.42 8 14532776 14544618
XM_039793119.1 False 2797 mRNA 0.42 8 14531790 14544618

Neighbor

gene id symbol gene type direction distance location
atp1b1b LOC104936446,LOC103355854,LOC103389586 coding upstream 23378 14499284 ~ 14508412 (+)
LOC120554078 LOC105905688,LOC102213723,LOC102296852 coding upstream 45547 14484168 ~ 14486243 (+)
cars2 cars2 coding upstream 97174 14420009 ~ 14434616 (+)
arl6ip6 NA coding upstream 205969 14305969 ~ 14325821 (+)
dmd dmd,LOC101067548 coding upstream 845186 13216211 ~ 13686604 (+)
ddx4 NA coding downstream 26508 14571126 ~ 14586743 (+)
ccdc14 NA coding downstream 44444 14589062 ~ 14598938 (+)
LOC120554576 hsf2bp coding downstream 70439 14615057 ~ 14636819 (+)
cryaa cryaa,LOC104954342 coding downstream 97095 14641713 ~ 14645495 (+)
LOC120554076 NA coding downstream 106524 14651142 ~ 14794465 (+)
G234777 NA non-coding upstream 58107 14473448 ~ 14473683 (+)
LOC120554077 NA non-coding upstream 70039 14448891 ~ 14461751 (+)
G234763 NA non-coding upstream 85528 14438958 ~ 14446262 (+)
G234721 NA non-coding upstream 175112 14356076 ~ 14356678 (+)
G234720 NA non-coding upstream 178140 14353419 ~ 14353650 (+)
G234838 NA non-coding downstream 100984 14645602 ~ 14646219 (+)
G234841 NA non-coding downstream 103506 14648124 ~ 14649049 (+)
G234869 NA non-coding downstream 321687 14866305 ~ 14887613 (+)
G234895 NA non-coding downstream 459011 15003629 ~ 15013712 (+)
G234908 NA non-coding downstream 475614 15020232 ~ 15020564 (+)
G234651 NA other upstream 386920 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 1328978 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 1506270 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 1734136 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 2162569 12358027 ~ 12369221 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 261909 14806527 ~ 14910075 (+)
LOC120554227 NA other downstream 484220 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 1844079 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 2211947 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 2215740 16760358 ~ 16760430 (+)

Expression


Co-expression Network