fdx1 (fdx1)


Basic Information

Item Value
gene id fdx1
gene name fdx1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 5805035 ~ 5813194 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793520.1
ATGCAGCAATAGTATCTGAGCCTACTCCGTGTTTTGTAGCTGATCATCACACTCACTTCATTTATTTTGGGATCTGAgacaaccattgacatatatataagacAACGAGCACCTGCCATAGGTTAACTTGCACGTGACGTTACGCAATGAACGTTACAGTGACAGAGTGACTTCCTTCTCGCAGCTAAAACAAGctagcttagctagctagctcagtGGGCTAAGTCAAACTTCTCTGGGTTTCTCTCCGTTGAGAAGCAAAGAGCTTGACCGAAGTGGACTGTGTCTGCGTGTCCAGCAGGTCAGATATTTCACCAGCTCCTTATCAACTTCGTGTAGCTACTTAAAATGGCTTTAGTAACCGCGTTAAGAAGACTGTCTCACGTCAGGTTACGAGAATATTCCTGGAGGACGGCGGCAGTAACTTCGAGTGCTGGTGCCTGGCTGACTGGTCAGAGGAGTTTTACCACCGGCACACAGTCTCTGAGgtCAGACAACAAGGTGACGGTCCACTTCATCAACCGAGACGGGGAGAAGGTCACAGCGAAGGGGTCGCCGGGAGACTCCCTGCTGGATATTGTCATTAATGAAGACCTTGACTTTGATGGCTTTgGGGCATGTGAGGGAACCTTGGCGTGCTCCACGTGCCATCTGATCTTTGACGAGGACGTCTACAAGACTCTGGGGCCAGTCACAGACGAGGAGATGGACATGCTAGATTTAGCCTACGGCTTGACTGACACATCTCGCCTGGGTTGCCAGATCTGTCTGACGAGGTCTCTGGAGGGCTTGGTGGCCAGGGTTCCGGAGAGTGTAGCGGACATCCGACAGAGCAAAGACGGATCCTCTTAACCCGCGGCGGGGCGACGTGGCTGTAGACATTGTGCCCGGTCAGGACTGAGGGAATGTGCACAGGGACGATGGTGGGTGTTAATCTGTCAGCACTGCTGGACTGCcacaacattattattatttttttttttatgaaaatactTCCAAGTCACCGACAACAAGAGCCAGCTTTTAATAACCAGAATGTAACAATACAGGATTTGGACTCGcaaatccatttttattttttattttatagaaaGTAAAACTACATAGGCAAGAGTTTTAGAGTAAACTCTGTAACCATTAGAGAACCTTGCCATCCTAGTGTGAGGAAGTATGGCAAAATATTACGACATAAACTCTAAGCTAAGACAAACCTATGATATCATATCCTTATAAACTCTTCATGTTAATCCTAATCACTTAAAAAACTTGTATTAGTTACTATGACTGATACATGAACATCACTTTGCAGACTGCAACATGTGCTAGTTTGTGGCTGTGCCTTCGATTATCTAAGAAAGTATCTTTTGATTTTCTTGTTACTATGACTGAATTTACAAgattctctctttgtgtgtaaaTGCAGTCATTATCACTGAACAAGGAAAAGGTCCACCGCTAAAAGACTACACAGCTGACTGCAGCCTGTGAAGGAAATGTTTGTGAACCAATGCAACTAACAGTTCTTGACGCCTCAGAGATTGTGCTGATGTCCCCCAATATTTTATTCTACATATGTATACCCCTACTATTGTTGGTTTGATCAGATCCTTTATGTAACCGTATAATTCAGTCATGTGATTGTACATAGctagaacacacacatatatatctatgtatagaatgaaaaataatgtaataaaaaaatcaccttTCTAATGGCGTGTTGAACTGTcagttttttcatgtttttatatattcagTTTGAAAATATCTTGTTTCTAGCATGTCCTTATTTCCCCCTACCGATAACCACAACCGTAAACCAATAATTACATCAAACGTTAATCAGGTCATTTTATTTGCAAATGCAGGTTCTTTTAGGCTTGTTAACACAGCGTATGAATACATGTATATAGAAAGGAGGCATAGACAATATAATAAAGCAACAGTCTTATGGCCtatttaaacaacattttgAGCTGCATAAAATATAAAGCTTGAAAAACATCCTTGGGGGGTCATATTTACATAATAGAAACATTGCGACAGGAcacatttgattaattcaaATCAATACAGGCATGTGTGAAAACCACATTGTTGGCAACAAATAGAAAATCAAGGATCATACCTACAAATTGTTCTACTGCGTGTATGTACTGCTGTATGTGCTGGAACACGACCTTTCATATGTCACGTGTGCTAATGCTGAGAAGCGTTTGAAATGTGtatagtgttaaaaaaaaaaaaaaaaaaa
>XR_005638507.1
ATGCAGCAATAGTATCTGAGCCTACTCCGTGTTTTGTAGCTGATCATCACACTCACTTCATTTATTTTGGGATCTGAgacaaccattgacatatatataagacAACGAGCACCTGCCATAGGTTAACTTGCACGTGACGTTACGCAATGAACGTTACAGTGACAGAGTGACTTCCTTCTCGCAGCTAAAACAAGctagcttagctagctagctcagtGGGCTAAGTCAAACTTCTCTGGGTTTCTCTCCGTTGAGAAGCAAAGAGCTTGACCGAAGTGGACTGTGTCTGCGTGTCCAGCAGGTCAGATATTTCACCAGCTCCTTATCAACTTCGTGTAGCTACTTAAAATGGCTTTAGTAACCGCGTTAAGAAGACTGTCTCACGTCAGGTTACGAGAATATTCCTGGAGGACGGCGGCAGTAACTTCGAGTGCTGGTGCCTGGCTGACTGGTCAGAGGAGTTTTACCACCGGCACACAGTCTCTGAGgtCAGACAACAAGGTGACGGTCCACTTCATCAACCGAGACGGGGAGAAGGTCACAGCGAAGGGGTCGCCGGGAGACTCCCTGCTGGATATTGTCATTAATGAAGACCTTGACTTTGATGGCTTTgGGGCATGTGAGGGAACCTTGGCGTGCTCCACGTGCCATCTGATCTTTGACGAGGACGTCTACAAGACTCTGGGGCCAGTCACAGACGAGGAGATGGACATGCTAGATTTAGCCTACGGCTTGACTGACACATCTCGCCTGGGTTGCCAGATCTGTCTGACGAGGTCTCTGGAGGGCTTGGTGGCCAGGGTTCCGGAGAGTGTAGCGGACATCCGACAGAGCAAAGACGGATCCTCTTAACCCGCGGCGGGGCGACGTGGCTGTAGACATTGTGCCCGGTCAGGACTGAGGGAATGTGCACAGGGACGATGTCATTATCACTGAACAAGGAAAAGGTCCACCGCTAAAAGACTACACAGCTGACTGCAGCCTGTGAAGGAAATGTTTGTGAACCAATGCAACTAACAGTTCTTGACGCCTCAGAGATTGTGCTGATGTCCCCCAATATTTTATTCTACATATGTATACCCCTACTATTGTTGGTTTGATCAGATCCTTTATGTAACCGTATAATTCAGTCATGTGATTGTACATAGctagaacacacacatatatatctatgtatagaatgaaaaataatgtaataaaaaaatcaccttTCTAATGGCGTGTTGAACTGTcagttttttcatgtttttatatattcagTTTGAAAATATCTTGTTTCTAGCATGTCCTTATTTCCCCCTACCGATAACCACAACCGTAAACCAATAATTACATCAAACGTTAATCAGGTCATTTTATTTGCAAATGCAGGTTCTTTTAGGCTTGTTAACACAGCGTATGAATACATGTATATAGAAAGGAGGCATAGACAATATAATAAAGCAACAGTCTTATGGCCtatttaaacaacattttgAGCTGCATAAAATATAAAGCTTGAAAAACATCCTTGGGGGGTCATATTTACATAATAGAAACATTGCGACAGGAcacatttgattaattcaaATCAATACAGGCATGTGTGAAAACCACATTGTTGGCAACAAATAGAAAATCAAGGATCATACCTACAAATTGTTCTACTGCGTGTATGTACTGCTGTATGTGCTGGAACACGACCTTTCATATGTCACGTGTGCTAATGCTGAGAAGCGTTTGAAATGTGtatagtgttaaaaaaaaaaaaaaaaaaa

Function

symbol description
fdx1 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

NR:

description
PREDICTED: adrenodoxin, mitochondrial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K22070 FDX1, ADX; ferredoxin-1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793520.1 True 2257 mRNA 0.41 4 5805035 5813194
XR_005638507.1 False 1757 transcript 0.43 5 5805035 5813194

Neighbor

gene id symbol gene type direction distance location
nbeal1 nbeal1 coding upstream 5505 5754654 ~ 5799530 (+)
stradb stradb,LOC101475154,LOC102300838,LOC102201729 coding upstream 50902 5745464 ~ 5754133 (+)
trim25l LOC103358241,LOC104950553 coding upstream 77309 5721126 ~ 5727726 (+)
cpo LOC108248691 coding upstream 86426 5713110 ~ 5718609 (+)
LOC120554531 LOC100701074,LOC102304238,LOC102791267 coding upstream 159191 5595153 ~ 5645844 (+)
lypd6 lypd6,LOC104948709 coding downstream 44193 5857387 ~ 5864457 (+)
zranb3 zranb3,LOC102788635 coding downstream 184204 5997398 ~ 6069105 (+)
LOC120554553 tmem163,LOC102197028,LOC103367750,LOC106914660 coding downstream 280329 6093523 ~ 6118224 (+)
enpp4 NA coding downstream 413634 6226828 ~ 6236129 (+)
gckr gckr coding downstream 435020 6248214 ~ 6266907 (+)
G232766 NA non-coding upstream 1768 5802903 ~ 5803267 (+)
G232764 NA non-coding upstream 4955 5799676 ~ 5800080 (+)
G232748 NA non-coding upstream 92241 5712450 ~ 5712794 (+)
G232747 NA non-coding upstream 93018 5711708 ~ 5712017 (+)
G232742 NA non-coding upstream 132487 5669418 ~ 5672548 (+)
G232776 NA non-coding downstream 27684 5840878 ~ 5842513 (+)
G232945 NA non-coding downstream 240940 6054134 ~ 6132175 (+)
G232950 NA non-coding downstream 269842 6083036 ~ 6085737 (+)
LOC120554563 NA non-coding downstream 306924 6120118 ~ 6122758 (+)
LOC120554564 NA non-coding downstream 314049 6127243 ~ 6128477 (+)
LOC120554525 vangl1,LOC102194868,LOC101486397,LOC102297404 other upstream 236834 5509088 ~ 5568201 (+)
LOC120554524 nhlh2,LOC104936900,LOC103370041,LOC108245682,LOC101487065,LOC107087002 other upstream 306511 5488161 ~ 5498524 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other upstream 763153 5003321 ~ 5041882 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other upstream 855946 4848638 ~ 4949089 (+)
scn1lab NA other upstream 1032040 4732462 ~ 4772995 (+)
LOC120554182 steap3,LOC103360323 other downstream 628501 6441695 ~ 6453327 (+)
LOC120554601 mest other downstream 2808911 8622105 ~ 8628297 (+)
cenpl cenpl other downstream 2899248 8712442 ~ 8716024 (+)
appa app,LOC108248770,LOC102783837,LOC103357360 other downstream 3194148 9007342 ~ 9040543 (+)
LOC120554037 NA other downstream 3282665 9095859 ~ 9109745 (+)

Expression


Co-expression Network