LOC120554576 (hsf2bp)


Basic Information

Item Value
gene id LOC120554576
gene name hsf2bp
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14615057 ~ 14636819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793537.1
CCAGATTGCATTTTAGTTATTTGTTTTAGGCGGCTTTCGTTCAACGCCGGTCAGGAGGAGGAACACCATCCGCCGTTGTGCCGCCTAGAGGGAAAGTAGAATCAACAGCAGAAGTAGAAGAAGACCATAAACTCCGACCGTAACAAGATGTCAGGATCATTAGGCGGGAAATCGCTAGCTCTGACTCATGGCGCAAAGATGAAGGCAAGGAAACAGggTGGTTTTGTCAGAGTGAGGAGAAGTGATTTAGAGAAGTTAACCACAGAAGTCATGCAGCTGAGGGAGTTCCTGCCCAGAGTTCTGAATGGGGACCTGATAGAAATGCTGCATAAAGCTCGAGCAGCTCAGACAAtgaaGGAGCACCTTGCGCAGGAACAGAAGCAGCTGCGACAGGAGTGTCTACACCTTCAGTCCCGATTGGATGCGGTGCAGACTGAAtgtcagaaagagagggaggagaaGCTGCTGTTACGTGAACAGCTGTGGCAGAGCGGAgcagagctgcagcagcaggcagACTTCTGCTCTGGTCTGGGATCTGCAACCTGCAGTCTGCTGTGGAGTTGCTCTTCCAGTGAGGACACGGTCACACGCTGGCTTGCTGATGGGAAGCTGCAATCCTTCCTGGCTGTAGCTGCCCAGACTCTGGAGAGTTTCGTCAGGTCTCTGGACGAGGAGGCAAAAACTCAAACTGAGGACCACAACTCCCAGGAGCACCAGTTTGTGCTTGCTCTGGCTGGAACCATTACAAACATAGCAGCCGTAACACGTGGCCGGGACTTCCTGTCAAGCTCTGTCCTACTGGACACTCTGATGAAGCTTTTGGAGCTGATGAAGCCCGGTGTCTTCCCAAAACTGAAAGTGTTGATGCTGATGGCTCTGTATAATGTCAGCATCAGTGTTAAAGGACTGAAGTGCATCAGTGAGAACCCAGGACTCCTGCCTCTCATCTGGACCCTGCTGGACGATGGAGACTGGGAGGTGTGTCTTCACTCTCTGCGTCTCCTGCAGTCGGTGTTGTTGGAGGAGGAGGTGCTGCTCCTGCTGGGCTCTGCTCTGCTGGATCCAGACCTCCATGCTCGTGTCAGCCGGCTCACCTCCAGTGTGCAACCCAGCCTGAGACTGGCTGCCCAGCAGACCATGGAGGACCTGCAGGCCCTCCAACAgGGTCGGGGATGTAAGCAGAGCGGCCTCTGATGGGGATTCAGTATCTTCAGTCCAGCCTTCCTTCTGTGTTAACTTTCCTTTCACGTCACATTACATCTGTCTGTGATTGTACACTACGTTCAAACtgaggagaaaaggagagagaggtagaAATGAAAGATTTCATCAAAGTTAAACCTATTTATCAAGGTAAAAGCAACAGCCTTTTATATCTAAATTTTAAtagctttctttttttacttgcaCTGTTCATTGTTGAGCCTTCAGGTTTGTTCCCATGATTGTGTCTTAATGGTTGTGATTACAGGTTTGTACAAGACACATTAAAGATGATGTTTGCACACTTTCA
>XM_039793538.1
GTTCAACGCCGGTCAGGAGGAGGAACACCATCCGCCGTTGTGCCGCCTAGAGGTCGGAGGGAAACTTTGAAATTATACTCACAAGGAAAGTAGAATCAACAGCAGAAGTAGAAGAAGACCATAAACTCCGACCGTAACAAGATGTCAGGATCATTAGGCGGGAAATCGCTAGCTCTGACTCATGGCGCAAAGATGAAGGCAAGGAAACAGggTGGTTTTGTCAGAGTGAGGAGAAGTGATTTAGAGAAGTTAACCACAGAAGTCATGCAGCTGAGGGAGTTCCTGCCCAGAGTTCTGAATGGGGACCTGATAGAAATGCTGCATAAAGCTCGAGCAGCTCAGACAAtgaaGGAGCACCTTGCGCAGGAACAGAAGCAGCTGCGACAGGAGTGTCTACACCTTCAGTCCCGATTGGATGCGGTGCAGACTGAAtgtcagaaagagagggaggagaaGCTGCTGTTACGTGAACAGCTGTGGCAGAGCGGAgcagagctgcagcagcaggcagACTTCTGCTCTGGTCTGGGATCTGCAACCTGCAGTCTGCTGTGGAGTTGCTCTTCCAGTGAGGACACGGTCACACGCTGGCTTGCTGATGGGAAGCTGCAATCCTTCCTGGCTGTAGCTGCCCAGACTCTGGAGAGTTTCGTCAGGTCTCTGGACGAGGAGGCAAAAACTCAAACTGAGGACCACAACTCCCAGGAGCACCAGTTTGTGCTTGCTCTGGCTGGAACCATTACAAACATAGCAGCCGTAACACGTGGCCGGGACTTCCTGTCAAGCTCTGTCCTACTGGACACTCTGATGAAGCTTTTGGAGCTGATGAAGCCCGGTGTCTTCCCAAAACTGAAAGTGTTGATGCTGATGGCTCTGTATAATGTCAGCATCAGTGTTAAAGGACTGAAGTGCATCAGTGAGAACCCAGGACTCCTGCCTCTCATCTGGACCCTGCTGGACGATGGAGACTGGGAGGTGTGTCTTCACTCTCTGCGTCTCCTGCAGTCGGTGTTGTTGGAGGAGGAGGTGCTGCTCCTGCTGGGCTCTGCTCTGCTGGATCCAGACCTCCATGCTCGTGTCAGCCGGCTCACCTCCAGTGTGCAACCCAGCCTGAGACTGGCTGCCCAGCAGACCATGGAGGACCTGCAGGCCCTCCAACAgGGTCGGGGATGTAAGCAGAGCGGCCTCTGATGGGGATTCAGTATCTTCAGTCCAGCCTTCCTTCTGTGTTAACTTTCCTTTCACGTCACATTACATCTGTCTGTGATTGTACACTACGTTCAAACtgaggagaaaaggagagagaggtagaAATGAAAGATTTCATCAAAGTTAAACCTATTTATCAAGGTAAAAGCAACAGCCTTTTATATCTAAATTTTAAtagctttctttttttacttgcaCTGTTCATTGTTGAGCCTTCAGGTTTGTTCCCATGATTGTGTCTTAATGGTTGTGATTACAGGTTTGTACAAGACACATTAAAGATGATGTTTGCACACTTTCA

Function

symbol description
hsf2bp Human ortholog(s) of this gene implicated in primary ovarian insufficiency 19. Orthologous to human HSF2BP (heat shock transcription factor 2 binding protein).

NR:

description
PREDICTED: heat shock factor 2-binding protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793537.1 True 1516 mRNA 0.50 10 14615057 14636819
XM_039793538.1 False 1510 mRNA 0.50 10 14615095 14636819

Neighbor

gene id symbol gene type direction distance location
ccdc14 NA coding upstream 16119 14589062 ~ 14598938 (+)
ddx4 NA coding upstream 28314 14571126 ~ 14586743 (+)
LOC120554303 LOC107101608,LOC103355870,LOC103477065,LOC106935410,LOC107832892,LOC106932269 coding upstream 70439 14531790 ~ 14544618 (+)
atp1b1b LOC104936446,LOC103355854,LOC103389586 coding upstream 106645 14499284 ~ 14508412 (+)
LOC120554078 LOC105905688,LOC102213723,LOC102296852 coding upstream 128814 14484168 ~ 14486243 (+)
cryaa cryaa,LOC104954342 coding downstream 4894 14641713 ~ 14645495 (+)
LOC120554076 NA coding downstream 14323 14651142 ~ 14794465 (+)
LOC120554245 NA coding downstream 424305 15061124 ~ 15070384 (+)
LOC120553992 hps3 coding downstream 647683 15284502 ~ 15285185 (+)
LOC120553993 NA coding downstream 697421 15334240 ~ 15372849 (+)
G234777 NA non-coding upstream 141374 14473448 ~ 14473683 (+)
LOC120554077 NA non-coding upstream 153306 14448891 ~ 14461751 (+)
G234763 NA non-coding upstream 168795 14438958 ~ 14446262 (+)
G234721 NA non-coding upstream 258379 14356076 ~ 14356678 (+)
G234720 NA non-coding upstream 261407 14353419 ~ 14353650 (+)
G234838 NA non-coding downstream 8783 14645602 ~ 14646219 (+)
G234841 NA non-coding downstream 11305 14648124 ~ 14649049 (+)
G234869 NA non-coding downstream 229486 14866305 ~ 14887613 (+)
G234895 NA non-coding downstream 366810 15003629 ~ 15013712 (+)
G234908 NA non-coding downstream 383413 15020232 ~ 15020564 (+)
G234651 NA other upstream 470187 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 1412245 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 1589537 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 1817403 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 2245836 12358027 ~ 12369221 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 169708 14806527 ~ 14910075 (+)
LOC120554227 NA other downstream 392019 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 1751878 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 2119746 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 2123539 16760358 ~ 16760430 (+)

Expression


Co-expression Network