Gene
RNA
| Item | Value |
|---|---|
| gene id | dmd |
| gene name | dmd,LOC101067548 |
| gene type | coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053135.1 |
| NCBI id | CM020932.1 |
| chromosome length | 21835524 |
| location | 13216211 ~ 13686604 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| dmd | Predicted to enable actin filament binding activity and zinc ion binding activity. Acts upstream of or within several processes, including sarcomere organization; skeletal muscle organ development; and somatic muscle development. Located in sarcolemma. Is expressed in several structures, including axial mesoderm; axis; chordo neural hinge; musculature system; and somite. Used to study Duchenne muscular dystrophy and muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin). |
| description |
|---|
| putative dystrophin |
| id | description |
|---|---|
| K10366 | DMD; dystrophin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_039793539.1 | False | 14582 | mRNA | 0.51 | 87 | 13216212 | 13686604 |
| XM_039793540.1 | False | 14579 | mRNA | 0.51 | 87 | 13216212 | 13686604 |
| XM_039793541.1 | False | 14573 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793542.1 | False | 14546 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793543.1 | False | 14546 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793544.1 | False | 14543 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793545.1 | False | 14537 | mRNA | 0.51 | 85 | 13216212 | 13686604 |
| XM_039793546.1 | False | 14519 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793547.1 | False | 14516 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793548.1 | False | 14516 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793549.1 | False | 14504 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793550.1 | False | 11394 | mRNA | 0.55 | 89 | 13216212 | 13683354 |
| XM_039793552.1 | True | 14608 | mRNA | 0.51 | 88 | 13216212 | 13686604 |
| XM_039793553.1 | False | 14468 | mRNA | 0.51 | 85 | 13216212 | 13686604 |
| XM_039793554.1 | False | 10968 | mRNA | 0.55 | 84 | 13216517 | 13683418 |
| XM_039793555.1 | False | 14453 | mRNA | 0.51 | 86 | 13216212 | 13686604 |
| XM_039793556.1 | False | 14414 | mRNA | 0.51 | 84 | 13216212 | 13686604 |
| XM_039793557.1 | False | 11316 | mRNA | 0.55 | 88 | 13216212 | 13683354 |
| XM_039793558.1 | False | 14530 | mRNA | 0.51 | 87 | 13216212 | 13686604 |
| XM_039793559.1 | False | 14402 | mRNA | 0.51 | 84 | 13216212 | 13686604 |
| XM_039793560.1 | False | 10905 | mRNA | 0.55 | 83 | 13216517 | 13683418 |
| XM_039793561.1 | False | 9930 | mRNA | 0.54 | 71 | 13216211 | 13611194 |
| XM_039793562.1 | False | 10412 | mRNA | 0.50 | 53 | 13489581 | 13686604 |
| XM_039793563.1 | False | 10487 | mRNA | 0.50 | 53 | 13491622 | 13686604 |
| XM_039793564.1 | False | 10393 | mRNA | 0.50 | 53 | 13492038 | 13686604 |
| XM_039793565.1 | False | 6394 | mRNA | 0.46 | 28 | 13547410 | 13686604 |
| XM_039793566.1 | False | 5428 | mRNA | 0.45 | 18 | 13613044 | 13686604 |
| XM_039793567.1 | False | 14356 | mRNA | 0.51 | 82 | 13216213 | 13686604 |
| XM_039793568.1 | False | 6295 | mRNA | 0.46 | 26 | 13547410 | 13686604 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC120554796 | NA | coding | upstream | 70993 | 13052363 ~ 13145218 (+) |
| LOC120554176 | NA | coding | upstream | 211408 | 12996051 ~ 13004803 (+) |
| wbp4 | wbp4 | coding | upstream | 224765 | 12986986 ~ 12991446 (+) |
| jagn1b | jagn1,LOC103376239,LOC102797060 | coding | upstream | 264851 | 12946562 ~ 12951360 (+) |
| LOC120554719 | LOC104966735,LOC102306959,LOC103389234,LOC102212482 | coding | upstream | 274822 | 12921143 ~ 12941389 (+) |
| arl6ip6 | NA | coding | downstream | 619365 | 14305969 ~ 14325821 (+) |
| cars2 | cars2 | coding | downstream | 733405 | 14420009 ~ 14434616 (+) |
| LOC120554078 | LOC105905688,LOC102213723,LOC102296852 | coding | downstream | 797564 | 14484168 ~ 14486243 (+) |
| atp1b1b | LOC104936446,LOC103355854,LOC103389586 | coding | downstream | 812680 | 14499284 ~ 14508412 (+) |
| LOC120554303 | LOC107101608,LOC103355870,LOC103477065,LOC106935410,LOC107832892,LOC106932269 | coding | downstream | 845186 | 14531790 ~ 14544618 (+) |
| G234482 | NA | non-coding | upstream | 10232 | 13202915 ~ 13205979 (+) |
| G234485 | NA | non-coding | upstream | 30402 | 13185515 ~ 13185809 (+) |
| G234401 | NA | non-coding | upstream | 264235 | 12951582 ~ 12951976 (+) |
| G234372 | NA | non-coding | upstream | 331041 | 12884655 ~ 12885170 (+) |
| G234369 | NA | non-coding | upstream | 369666 | 12846189 ~ 12846545 (+) |
| G234561 | NA | non-coding | downstream | 38642 | 13725246 ~ 13725480 (+) |
| G234562 | NA | non-coding | downstream | 39474 | 13726078 ~ 13726690 (+) |
| G234571 | NA | non-coding | downstream | 59466 | 13746070 ~ 13749721 (+) |
| G234640 | NA | non-coding | downstream | 404184 | 14090788 ~ 14091270 (+) |
| G234674 | NA | non-coding | downstream | 494493 | 14181097 ~ 14181507 (+) |
| LOC120554638 | tmem47,LOC104936888,LOC106530717,LOC102201289 | other | upstream | 13399 | 13169370 ~ 13202812 (+) |
| G234425 | tsc22d1,LOC106531085,LOC102196627 | other | upstream | 190691 | 13002963 ~ 13025520 (+) |
| LOC120554049 | ect2l | other | upstream | 418557 | 12786641 ~ 12797654 (+) |
| LOC120554058 | obsl1,LOC102777652 | other | upstream | 846990 | 12358027 ~ 12369221 (+) |
| LOC120554357 | NA | other | upstream | 859034 | 12299632 ~ 12357177 (+) |
| G234651 | NA | other | downstream | 429255 | 14115859 ~ 14144870 (+) |
| LOC120554715 | LOC103355859,LOC104964875 | other | downstream | 1119923 | 14806527 ~ 14910075 (+) |
| LOC120554227 | NA | other | downstream | 1342234 | 15028838 ~ 15042444 (+) |
| LOC120554234 | NA | other | downstream | 2702093 | 16388697 ~ 16612671 (+) |
| trnat-cgu_20 | NA | other | downstream | 3069961 | 16756565 ~ 16756637 (+) |
