LOC120554635 (LOC104961873,LOC103363323)


Basic Information

Item Value
gene id LOC120554635
gene name LOC104961873,LOC103363323
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20442981 ~ 20456063 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793653.1
gtttgTTGATTTCTAACAGGGCTTAAGGTGCAGAACTAATTTGACTGCCATAGCGGCAAGCAAAGAGTAAAAGCAGTGTGTTCTTGTAATCCCTAAACCTTTACACCTGGCTTTGCCGGAACAATACACATTGGCTTACGATCTGTGGAGGTAACATATCTTTCCTTCGCCTGCAACTTTGGATTTTGGAACTTCCTGGGAATCGTGCAGGTCTTCTACGATCTTCACGGCTTGGTAAAACAATCTGAAATCCATGTTGGATCTACTCCGGAAACCTGGATTTATCCGGAAATCATCCTTCACATCAGAACTTGGAAGCTATTCAAGGATTTCAACCCTTTAGGGACTTTGGtaacaatttattcatattCCTACTCTTGCTTTGGAACATCAAAAATACTGTGATATCTTTTTTATACATAGTTTTTGGAATACTGGGTTAATTTTTACGATCTTTTGGGAAGCTTTGCATCCCCAGGAAACACGCTGGAAACTATCTGGAAACTAGAACCATTCTGCAATCTTAGTAAGTCCAAAATCCGTCAACAACTGTTTCTGAAATACTCTACCCAAACACGACTTGACATTTTGTAGAACTGCAAGGTTCATTTATTCAATATTTTCTGGAATACTGGGTTTATTTTTATGATCTTTTTGGAAGCTTAGCATCCCTGGAAACACGCTGAAATTCACTCTTGGACATAACCCGGAAACTGGAACCATTCGGCAATCTTAGTCCGAGTATCTCCCAAAAACATCTTTAACTGTTTCTAAAAAACCGGACCCAAACacaatttgacattttgtagaACTGCACACTGATCCTGGACATTTGTGCACCAATTCTCCCTAAGTAAGTGTCccaatcatttattttaaacgTCCCAAAATGGCAGCAAATCAGTCAGGCTCTTGTACGAACCCAGACCTGTCAAATGGCGCCATTGTCCACAGTGAGATAGATATTTGTTCGGACCTGGATACcctgagaggaagagaggatgaggagggagaAGAGGTAGACGAGGAGGTGGAACTAGCCGATGAAGTTGGTGAGGATGTTTTGATGATGCCAGAAGCCGAAGGAaaaagcagagagcagagagaaagggaggaggcGAGGATTATGCAAATGGCGGTGTTAACGActgaagggttagggttaggcaaaGGCGACGGGGAGCAAGAGTCAAAAGACAGAAAGGGTCTCTTTTCGGCGTCGATAAACATTGAGAAAGATCGAGAAAAGGCGTTATGgagcagcaaaaaaaagaaaaaacatttggaAGATAAAGTCAATAAAGAAGAAGCACTGATAATAACTTTTGTAACAGAAGCAAGAGAGGATGGACACAACGGGTCAGAAGAAAACCAGGACTCAGCTACGTTTCCAGAAGAATTCGGAGAGGATATACAGTTGTCTGCTACAATTAAAGATGTGACCATGGGGATTAAAGAACAAGTCAACAATCAAACATCAACTGTTGGTGCCAATATCGTACCCTTAAAAACAATTGTGTTAGAAGAAAACAAGGCGCATGCAACGCATGTTCAGGACTCTGGTTTGGTTGTAGAAGAATTTGGAGAGGGTACCCATTTGTCCGCGGACGACACAGAAGTTGTTACTGAACTAACGAATCGCAAGGTAACAAACAAGATTGTCACATGGCAACAGGAGGACTGCGTAGAGGCAAAAGTTGAGGATAAGGAAAGCAAAGAGTTTGCCAAAGACGCAATGTCGACTTTGGATAATGTCCTAGACATCGGGGATGAAGTTAAAGAGAAGTTAGGGACAAAATACTTTGTGTCCTCTGAAGAACAGTCACAGACAGGAGGAGGGATTGAGGAAGTAGGGATCAACAAGCGGGAGCGAGAGGAAAAGCAAGAGCGACAGGTTGGGGTTAATACTCTCGCAGGGACGGATGGGGGAGGACAGAGAACGGAAGAGGATAGAAAGACAGGTGATAACGTTGTTAGAGAGTtaatgggagaggaggaagagcacAAAGGTGATCTAAAAATGCAAGAAGAGACGATTGTTCAAGTTGAAAACCAGTGTGCAGATGAGGTACATTTAGACACACAGCAAGATGTGTATTTGGACCAAGTTGAAGAGGCATTTGAGCTGGAGGAAGAGGGTAAATTAGAATTTGAAAAGTCAGGAAGTGAAGTCACTGCAGAGGAAAATGAGTCTACAACTGAGGAGGAAGGTGATCTGCTAGAACATCCTTCACAGACTCGAAAAGACACCGTGAACGATTGGGGGGGAAGTTTGAAAGAACAGGCCCTTGTAGAATACgaaaagggaggaggagaagaaaataGAGATGTAGAGATGGCAGAAGAGCCTGTGACTGTTTTAGATGATGACTTTGAAGAGATAGAGGACGGTCCGAGGACAGAGCTTGATGAACAAGATCCTGCAGTTGTTACAGCGCCTTCTAAAGACGCCAAAGTCGAGACAAAGGATCAAGAGTTTCAAGAACTGCGAGAAGACAACAAAGTTGAGACAAAAGATCGAGATTGGCAAGAACTTGGAAAGGAGAAGGATGGGAAACAGAAACATGTAGAGAAGGATAAGAAACAGAAAGATGTCAAAAAAGAGATAGAGTTGGAGATAAATGGAAGAGTTAAAGGATTGAAGCAAGCGATGGAGAACGGGATCTTGTGTCCTGATCTGCAGCCACTCCGAACAGAAGAATCGCCAACAGCGAGACTTCTGTCGCTCCGGAGAAAAAAAGATAATGACTGGATTAAAAAGGGGACACCTGAGGAAGAGAGATCACCAGAAATGAAATCCTGGAGGAAAGAACTGAAGCCTGTGATGAAAAAAGAAGTCCAAGGGGAATCTGAGAGGGTGAGAAATGAACGGTTGAACAAGGAAACATCCGCAGAAGAGAAAAGTCTTTCTCCGCAGAAGGACGCCTGGATAAAGGAGCTGAAGTCAGTGATCAAACAGGAATCCCTGCCGAAGCCGGTGAAGAAGAAGCGAGTGGTGCTGTTGGAGGATGGACATGCATACATTCCCCAGCGGGAGGATATGATGGAGGAGAAGAAAGACGAGTTGAAACTGATGTCTCAAAGGAAGGCGGAGAGTCCTTTGCCGCCTGGGCGCAGGAACAGTAAAACACCCCAAGACCAGGACTATGAGATCTCACTCTACGTCAAGgcaggAAGTGACGGCGAGAGCATCGGTAACTGTCCCTTCTCTCAGAGACTCTTTATGATCCTCTGGCTCAAAGGAGTTATCTTCAACGTCACCACTGTCGACCTCAAACGGAAGCCGGCAGACCTGCAGGACCTCGCTCCAGGAACCAACCCTCCATTTGTGACGTTTAACGGCGAAGTTAAAGTCGACGTCAACAAGATTGAGGAGTTCCTGGAGGAAAAGCTGACCCCGCCACGCTACCCAAGACTGGCTGCTAAACACGCTGAAGCTAACACAGCGGGCATTGACGTGTTCGCCAAGTTCAGTGCTTACATCAAAAACTCCAGGAAAGACACCAATGAGGCCTTAGAGAAAGCATTGCTGAAGTCTCTCCAGCGTCTTGATGACTTCCTGCGGACGCCGCTGTCTGAGGAGATTGATGCCGACGCCGCAGGAGATCTTCCTGACTCGTCCAGGAGTTTTCTGGATGGCTCCGAGTTAACGCTGGCTGACTGTAACCTGCTGCCGAAATTGCACATCCTTAAGGTCGTAGCCAAGAAGTACCGCGGCTTTGAGATCCCGGCGGAGATGACGGGGCTGTGGCGGTATTTAAACTGCGCCTATCAGAGGGAGGAGTTCACCAGCACCTGCCCCGCCGAGAGGGAGATCCAGGTCGCCTATCTGGATGttgcaaaaaaaatcaaatgagACATGACGGAGACAAAGCAGATAGGAGAAAGTGTGAAGAGATAAATCATGCGTTAGTTTGGGTGGTACAACAAGTAGACAAATAGAAGATGTAAGGAAATCCTGATAAATTTACATGAACATGCAGGAGGCTAAATGGAGAACAACCCGTAGATTCCACCAGGCGCCTCTGTGCTGCGTTGACATTTGGTTTCATACTTTCtctaataaaacatctaaaacaaatcaaaaatccCATCAGATGGTGAACCCCTGTACAAAATCTTATCTTATacgtctaatttgtgtcagtttaggccATGGCGTTTTCCAAATAAACTCCCTGTGCACACTCCCGATCATATGTCACATCACATTAATATTTTAACATCTAAAACACAGACGCAAATCTTTGATCGGTGTCGTATTACGCACGCCGGATGAAGGAACAATATCTTGGCGAAGCCTGGTGGAATTTCGGACTGAGAACTCCGGGTTATAGACTATAGGCCGATCCATACTATAACATCTATTTACTCCTTCTATTCAGTGTTTttaactgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcacagGTTGGGTTGCACAGTCATCTACTGAAACTTTATGCTTATCAttttacaaataatgaaacCAGTAATTATTCTCAATTTTCAGACGATGGCAGGGCCAAGACTCAATAAGTAGTACAAAGAAAGAGCTTTAGTCTTCAGTGTTGCTgcattaaaaaacatgtttagcTTAATATTATGATGTCTAACCTTTAGAGATTAGTTAACAACTTGTCCTTTAATTTGAATCAAAACCTttacaatataaatgtaatgtaattgcaagaaagcaaataagaatatcatttaaaatgacttaaacTATTCCTACATTTTGATTTCTTGTGAATGCacatttgatttatttgtaatatGTTTGGATTTTATCGCCATCAGAATCTGAAaacagtgcattctgggagccaGCGGGGCTGACGGACCTGTAAGGGTTGGGGGGGGACCCATGTTTCCAACCCGTTTTCATTTCCAATACTGAGATACAAAACGTTTAAATGGAGGTCAAAACTACGAAAATATATGACCCAAGGTGTAATAAACTGGAATTATCCTTTAAATGTAGGCATTAAAATGAGAGACACACTGCAGGTGGCCACTGGCAGACTCAATcctactctttaactaaaaggtctatctctgtagggatcctttccataatgttgtcagacacttagaataataatcacATTACAGCTTTaagtttaatactggaccagtctCAGAGATTGCTGTTCCATTAGACACTCAGGCACAAACATGGagacatagggtccaggttgaaaaatcaACGTTACCCTTTAATGTTGGCATtaaaaagtgagagaaacacTGCAGGTGGATATGACCAGAGATTTATTTGGCTTAACGTAATGTCTACTGACAAATTCAGTGATTGGAGAATCTTACTTGAAGAAATCCATTCCCTTCTGCTGCTCCAGAAGGTCTAGTCAACCGTCCCACTGAAAGTGTAATCACACTTAAAATACCATATTGACTCGAATGTAAGACGACCCTGATTATAAGACAACCCTCTCTCCTTTTCTAGGCTCATTTTTGGAAAAAGACGTTTTGAAGACTAAATCTTGTTTTTATAAAGAAATTAATTTTATAGGAAAATAATGATCTTAAGGTTGTTCAAGATCTTTTTATTGAAAATACTGTGTCTGACCCAGACAGAATATAGTTATTTGCGTACCGAGCCAAACGCTTGACAGCCTAACACTATCTCAGAGCTTCATATTACGTTTACTGCGTCAGGCTCGGGTTTGGACATAAAAAACAGAATCAGGCTTGGTTTCAACTCTCTCTTCAGACAAAAAAAAGGCGGCCCTCGCTGCTGGCTGGCTCAACAATTGGCGCCATCTGCTGTTGTGAATGTATATGGACATTTAAGAGTCTAGATGAATGAAAGATTACCCCATTTTTTAGCCATATTTCTAGAGAAAAGGGTCCTGTATTCAGGCCAATAACTTGCTGAATATCTATGTCTTAATGTTAATGACCAATCAAATCAAGATGTTTAAATACAAGGCCAATCTAAAAGCATTTTTCTACTTTGTATCAACAGTTAATTGTACTgaatgtgtatctgtctgtatgCTGATGACATTAGACTATTTACTCATATTGTGATTATTTCTGCTTTTGTATCTTATGAGACTGACTGAGTGTCTGCTGGTTCAACTAGTGATGACACTCAAAGATGCCATTATAATACTGTCAAACTCCCTGGTACTATACTATCACATATCCAAAGTAATGTATCCTTGCTCCTGTTGTCAGCATCAACAGTGCAACCAGTTCCATTcatgcaacgcattctcatatCGCAttaggatatcatacgaaaacTTATGCACAATAATTCGTATAATATGGTACGATATAACAGCGCCTGCTGgtcggtctttacagttaagtttaacAGAGAAAAAGTAAGCTCAGAAAAAGTGAGCTCAGAAAAAGTGAGctcagaaaaagtgagcgtcatgcagtgatgacagttaaatttagacaccaaaacaactagttatgGCTAGTTAAAAAAGATAGCAGTTTGGGTTGAAACAGAAGTCCCCTTAAgcagtgctttacttttcgtTTAAAGCTAAATGTACGAatgcttcatgagaacagcctgattcATGTCATACAAGAATCTCATTCATCAGTTAAAAATGTGTCTCCTGTCATGGcaatttactattttttttaaattaaagatgaTTTGAGTGTTAGATAACAaaatatttgtttcattttcagcCATTTGGGGTATTATTATCAAAGCAGAATTcaggaaaaaaacaatcttGACAGGATAcaaatgtttttcaaattgtTTCTTTACAGATTTTTTCCAGCTCCcttgaatgcagctttaagtgaTTAATATCCTGTGTGTGATTGTTGGACAGTGGTGTTTGGTGTTCAGTGTTTGGCAGAGATGTGTAAGTTCTGGCCTTATATCCTCTCTGGGGATTCATCTTTATTAAACTGATTTATCTTTGT

Function

NR:

description
PREDICTED: chloride intracellular channel protein 5-like isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0051049 regulation of transport biological_process
GO:0006820 anion transport biological_process

KEGG:

id description
K05026 CLIC6; chloride intracellular channel protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793653.1 True 6967 mRNA 0.42 6 20442981 20456063

Neighbor

gene id symbol gene type direction distance location
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding downstream 62489 20375593 ~ 20380492 (-)
pnpla4 pnpla4 coding downstream 687012 19749071 ~ 19755969 (-)
aox6 NA coding downstream 788669 19622102 ~ 19654312 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding downstream 821330 19608622 ~ 19621651 (-)
kynu kynu,LOC102785701 coding downstream 861723 19551436 ~ 19581258 (-)
LOC120554361 NA coding upstream 338283 20794346 ~ 20802270 (-)
vps16 vps16 coding upstream 397502 20853565 ~ 20867800 (-)
dytn NA coding upstream 509875 20965938 ~ 21075255 (-)
ftcd ftcd coding upstream 534827 20990890 ~ 21003269 (-)
LOC120554641 LOC103473932 coding upstream 670831 21126894 ~ 21149363 (-)
G236282 NA non-coding downstream 48947 20383151 ~ 20394034 (-)
G236279 NA non-coding downstream 69740 20373000 ~ 20373241 (-)
G236261 NA non-coding downstream 130154 20305493 ~ 20312827 (-)
G236249 LOC103376870 non-coding downstream 170247 20271475 ~ 20272734 (-)
G236248 LOC104951987,LOC103359801 non-coding downstream 171568 20270484 ~ 20271413 (-)
G236293 NA non-coding upstream 21123 20477186 ~ 20479038 (-)
G236294 rcan1,LOC106534915,LOC103389732 non-coding upstream 23092 20479155 ~ 20480319 (-)
G236303 NA non-coding upstream 53164 20509227 ~ 20511076 (-)
G236309 NA non-coding upstream 81838 20537901 ~ 20538114 (-)
G236310 NA non-coding upstream 84392 20540455 ~ 20540699 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other downstream 74548 20367341 ~ 20368433 (-)
G236111 sts,LOC108241831 other downstream 710444 19731319 ~ 19732537 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other downstream 913739 19523504 ~ 19529242 (-)
LOC120554371 mbd5,LOC102784158 other downstream 2003563 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 2115878 18271078 ~ 18327103 (-)
G236340 NA other upstream 270340 20726403 ~ 20728427 (-)
G236349 NA other upstream 304645 20760708 ~ 20760992 (-)
rgn LOC103371141 other upstream 387429 20843492 ~ 20853383 (-)
G236646 NA other upstream 406617 20862680 ~ 20863311 (-)
LOC120554644 NA other upstream 436851 20892914 ~ 20920498 (-)

Expression


Co-expression Network