ftcd (ftcd)


Basic Information

Item Value
gene id ftcd
gene name ftcd
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 20990890 ~ 21003269 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793680.1
TGAGGCTGGACTTTGAGCATTAGTTTGGTGTCTCTTCCTTCAGTCTACAGACGACATCATGGCTCAGCTGGTGGAGTGCGTCCCAAACTTCTCCGAGGGCCGAAACAAAGAGgtgatCGATGCGATCTCATTGGCTATCTCCGAGTCCCCCGGCTGCAGCCTGCTGGACGTGGACGCCGGAGCGTCCACCAACCGGACGGTGTTCACCTTCGTGGGCTCGCCGGCCGCCGTGGTGGAGGGGGCCCTGAACGCAGCACGCATCGCCTTCAGCCGCATCGACATGGCAACGCACTCAGGTGAGCATCCTCGGACCGGAGCGCTGGACGTGTGTCCCTTCATCCCCGTCCAGAACGTCTCCATGGACGACTGCGTCCGCTGCGCCGAGACCTTCGGACAGAGACTGGCCGAGATGCTGCACGTCCCCGTGTATCTGTACGGAGAAGCAGCGCGGAGAGAAACCAGGAGAAATCTCCCGTCTGTCCGAGCCGGAGAGTACGAAGCTTTACCTGACAAGTTGAAGCTTGCTGATTGGTCCCCTGACTTCGGCCCGGCGGAGTTCGTGCCATCGTGGGGTGCCACGGTAACCGGCGCTCGTAAGTTCCTGATCGCCTTCAACGTGAACGTGATCGGCACCAAGGAGCAGGCGCACCGCATCGCGCTGGACGTCCGGGAGCAGGGCCGCGGCAAGACACAGcCGGGGCGTCTGAAGAAGGTGCAGGGGATGGGCTGGTACCTGGACGAGTCCAACATGGCCCAGGTGTCCACCAACATCCTGGACTACGAGCTGACCCCCCTCCACACGGTGCACCAGGAGATCTGCAGCGTTgcaaagGAGCTGAAGCTGCCAGTTGTGGGCTCTCAGATCGTGGGTCTGATTCCTCTGAAAGCCGTCCTGGACTCGGCCGACTTCTTCATCCAGAGAGACGGGCTCTTCATCCTGGAAGAGGAGCACAAAGTCCGCCTGGTGATCAGTAAACTGGGCCTGGACTCTCTCGGCCCGTTCAACCCCAAGGACAGAATCATAGAGTACATGGTGCAGTCTGGGGACGACAGCCGtctggtgtctctctctctgcagcagttTGTTCAGAGCGTCGGCGCTCGCACGGCAGCTCCCGGCGGAGGATCGGTTTCTGCTGCCGTCGCTGCTATGggCGCGGCGCTGGGCGCCATGGTGGGTCAGATGACCTACGGGAAGCGCCAGTTTGACCATCTGGACGGAGTGATGCGGCGCCTGATTCCTCCGTTCCACCAGGCGGCGAAGGAGCTCCTGGACATGGTGGACGCCGACTCCACCGCCTTCAACAGCTACATGGCGGCGCTGAAGATGCCGAAGACCTCAGCAGAGGAAATAAAGAGGAGAGAGGTGATGATGCAGGCTGGTCTGCAGCGAGCGGTCAGCGTGCCGTTGGCTCTGGCCGAGAGGGTCAACGTCCTCTGGGCGCCGCTTAAAGAAATGGTCGTCAACGGCAACATCGCCTGCAAGTCGGACgctcagGTGGCGGCGAAAGCGTTGGAGACGGCGGTGTTCGGGGCGTATTACAACGTCACCATCAACCTCAACGACATCACAGACCAAGACTTCAAGATGGCCaCTGAGAAACGAGTGGCAGCGTTGCTGCAGGAAGCGAAGGAGAGCGCCGCTGCCGTCCTGCTCGCTGCTGaccacaggaagtgatgtcatctCCATCCTGCTGaccacaggaagtgatgtcatctCCATCCTGCTGACcagaggaagtgatgtcatcTTCTTCAGCGTTGAACTTCTGACcctgtgattggatgtaaacaaaaaaaaattaaaaacacattttcatta
>XM_039793681.1
ATGGCAACGCACTCAGGTGAGCATCCTCGGACCGGAGCGCTGGACGTGTGTCCCTTCATCCCCGTCCAGAACGTCTCCATGGACGACTGCGTCCGCTGCGCCGAGACCTTCGGACAGAGACTGGCCGAGATGCTGCACGTCCCCGTGTATCTGTACGGAGAAGCAGCGCGGAGAGAAACCAGGAGAAATCTCCCGTCTGTCCGAGCCGGAGAGTACGAAGCTTTACCTGACAAGTTGAAGCTTGCTGATTGGTCCCCTGACTTCGGCCCGGCGGAGTTCGTGCCATCGTGGGGTGCCACGGTAACCGGCGCTCGTAAGTTCCTGATCGCCTTCAACGTGAACGTGATCGGCACCAAGGAGCAGGCGCACCGCATCGCGCTGGACGTCCGGGAGCAGGGCCGCGGCAAGACACAGcCGGGGCGTCTGAAGAAGGTGCAGGGGATGGGCTGGTACCTGGACGAGTCCAACATGGCCCAGGTGTCCACCAACATCCTGGACTACGAGCTGACCCCCCTCCACACGGTGCACCAGGAGATCTGCAGCGTTgcaaagGAGCTGAAGCTGCCAGTTGTGGGCTCTCAGATCGTGGGTCTGATTCCTCTGAAAGCCGTCCTGGACTCGGCCGACTTCTTCATCCAGAGAGACGGGCTCTTCATCCTGGAAGAGGAGCACAAAGTCCGCCTGGTGATCAGTAAACTGGGCCTGGACTCTCTCGGCCCGTTCAACCCCAAGGACAGAATCATAGAGTACATGGTGCAGTCTGGGGACGACAGCCGtctggtgtctctctctctgcagcagttTGTTCAGAGCGTCGGCGCTCGCACGGCAGCTCCCGGCGGAGGATCGGTTTCTGCTGCCGTCGCTGCTATGggCGCGGCGCTGGGCGCCATGGTGGGTCAGATGACCTACGGGAAGCGCCAGTTTGACCATCTGGACGGAGTGATGCGGCGCCTGATTCCTCCGTTCCACCAGGCGGCGAAGGAGCTCCTGGACATGGTGGACGCCGACTCCACCGCCTTCAACAGCTACATGGCGGCGCTGAAGATGCCGAAGACCTCAGCAGAGGAAATAAAGAGGAGAGAGGTGATGATGCAGGCTGGTCTGCAGCGAGCGGTCAGCGTGCCGTTGGCTCTGGCCGAGAGGGTCAACGTCCTCTGGGCGCCGCTTAAAGAAATGGTCGTCAACGGCAACATCGCCTGCAAGTCGGACgctcagGTGGCGGCGAAAGCGTTGGAGACGGCGGTGTTCGGGGCGTATTACAACGTCACCATCAACCTCAACGACATCACAGACCAAGACTTCAAGATGGCCaCTGAGAAACGAGTGGCAGCGTTGCTGCAGGAAGCGAAGGAGAGCGCCGCTGCCGTCCTGCTCGCTGCTGaccacaggaagtgatgtcatctCCATCCTGCTGaccacaggaagtgatgtcatctCCATCCTGCTGACcagaggaagtgatgtcatcTTCTTCAGCGTTGAACTTCTGACcctgtgattggatgtaaacaaaaaaaaattaaaaacacattttcatta

Function

symbol description
ftcd Predicted to enable folic acid binding activity; formimidoyltetrahydrofolate cyclodeaminase activity; and transferase activity. Predicted to be involved in histidine catabolic process to glutamate and formamide; histidine catabolic process to glutamate and formate; and tetrahydrofolate interconversion. Predicted to act upstream of or within histidine metabolic process. Located in Golgi apparatus. Is expressed in liver; pronephric duct; and yolk syncytial layer. Human ortholog(s) of this gene implicated in glutamate formiminotransferase deficiency. Orthologous to human FTCD (formimidoyltransferase cyclodeaminase).

NR:

description
PREDICTED: formimidoyltransferase-cyclodeaminase

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005542 folic acid binding molecular_function

KEGG:

id description
K13990 FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793680.1 True 1822 mRNA 0.59 14 20990890 21003269
XM_039793681.1 False 1542 mRNA 0.59 13 20990890 21001827

Neighbor

gene id symbol gene type direction distance location
vps16 vps16 coding downstream 123090 20853565 ~ 20867800 (-)
LOC120554361 NA coding downstream 188620 20794346 ~ 20802270 (-)
LOC120554635 LOC104961873,LOC103363323 coding downstream 534827 20442981 ~ 20456063 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding downstream 610398 20375593 ~ 20380492 (-)
pnpla4 pnpla4 coding downstream 1234921 19749071 ~ 19755969 (-)
LOC120554641 LOC103473932 coding upstream 123625 21126894 ~ 21149363 (-)
LOC120554016 NA coding upstream 648697 21651966 ~ 21691088 (-)
LOC120554648 NA coding upstream 697436 21700705 ~ 21725016 (-)
G236659 NA non-coding downstream 1090 20988518 ~ 20989800 (-)
G236624 NA non-coding downstream 2416 20958314 ~ 20988474 (-)
LOC120554667 LOC108242155 non-coding downstream 63734 20920580 ~ 20927156 (-)
G236649 NA non-coding downstream 94758 20894240 ~ 20896132 (-)
G236559 NA non-coding downstream 108709 20880919 ~ 20882181 (-)
G236662 NA non-coding upstream 26668 21029937 ~ 21030262 (-)
G236673 NA non-coding upstream 48238 21051507 ~ 21052073 (-)
G236572 NA non-coding upstream 66047 21069316 ~ 21077796 (-)
LOC120554677 NA non-coding upstream 166526 21169795 ~ 21183925 (-)
LOC120554675 NA non-coding upstream 188450 21191719 ~ 21199247 (-)
arl11 NA other downstream 39025 20940988 ~ 20951865 (-)
LOC120554644 NA other downstream 70392 20892914 ~ 20920498 (-)
G236646 NA other downstream 127579 20862680 ~ 20863311 (-)
rgn LOC103371141 other downstream 137507 20843492 ~ 20853383 (-)
G236349 NA other downstream 229898 20760708 ~ 20760992 (-)
LOC120554013 LOC103366577 other upstream 197727 21200996 ~ 21242177 (-)
LOC120554014 NA other upstream 297012 21300281 ~ 21557021 (-)
LOC120554015 NA other upstream 631579 21634848 ~ 21651918 (-)
G236611 NA other upstream 670423 21673692 ~ 21674838 (-)

Expression


Co-expression Network