dph3 (dph3,LOC107559917,LOC105022091,LOC107660145)


Basic Information

Item Value
gene id dph3
gene name dph3,LOC107559917,LOC105022091,LOC107660145
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 21367445 ~ 21371904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793688.1
ACGCCTGAGACATCAGCCAGAGACGTCATCACTGCGTGCCACACAGCACGGATGGGTTTAACAAATGTGTTGAGCTAATGGCTAATTTTTTGTAGGTTTTTGAGCTCATCTCGCGCAGAAAATGTCGGTATTTCACGACGAAGTAGAGATCGAAGACTTTGAGTATGACGAGGAGACGGAGACGTATTACTTCCCCTGTCCTTGTGGAGACAAATTCGCCATAAGTAAAGAGGATCTGGAGAACGGGGAGGACGTGGCCACATGTCCCAGCTGCTCTCTCATCGTTAAAGTTATCTATGATCAGgAGCTGTTCATGTCGGGAGAAATCATCGAAGCGCCGTCGTCCACGGAAACCAAACGGGAGCTGGTTCAGTCCTCgtgacccccccaccccccccaaatcatcatcatcatgtgtAAAACAACGTACTGTACCTTTTAAATCCCCTTTTATTTatgcagagaggcagacagcTTCATGTTTTATGGATCAATCTTCAGTGTGAACATAAAAAACCTCATCATCAAAGTTTGttttatcagaaatttgggtttcttaacaaccaaattgcccaaaattaACACGGCTGCATGATGTACGTTATATGGAACCCATAAACGATCTTCACAGGTACAATTAatcattactttcattgaaattttggagttttattcaattttataacatttgaatatattttttaaatggtctAAAGACTAAAGTTTGACATTAAACAGTCTGTGATTCATTCAACATCTTCTGATATTAACTATTAGTCAACAAAATGCatcatttcagctttttttactCAAAAATGAGGTATATTGTCATTTAAATTTGATTTAATgaacatgaatttaaaaaagtgtttaGAAAAGttcaaaaaaaaagttaattttcaatTTATCATGGAGGTCTGGTCATGTCTCAGAGTATTAACTTATATTTTACTGTCTCGTGTGtaaatatttatgttttaacagaATTAAAACTCTTCAAACAGCA

Function

symbol description
dph3 Predicted to enable metal ion binding activity. Predicted to be involved in peptidyl-diphthamide biosynthetic process from peptidyl-histidine and tRNA wobble uridine modification. Predicted to be active in cytosol and nucleus. Orthologous to several human genes including DPH3 (diphthamide biosynthesis 3).

NR:

description
PREDICTED: DPH3 homolog

GO: NA

KEGG:

id description
K15455 DPH3, KTI11; diphthamide biosynthesis protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793688.1 True 1006 mRNA 0.37 3 21367445 21371904

Neighbor

gene id symbol gene type direction distance location
LOC120554662 NA coding upstream 75222 21289363 ~ 21292223 (+)
LOC120554666 NA coding upstream 176000 21165803 ~ 21191445 (+)
LOC120554012 NA coding upstream 201891 21157961 ~ 21165554 (+)
LOC120554651 NA coding upstream 246675 21098583 ~ 21120770 (+)
LOC120554645 NA coding upstream 303528 21049514 ~ 21063917 (+)
cdk15 cdk15,LOC100710713 coding downstream 711 21372615 ~ 21392410 (+)
LOC120554659 NA coding downstream 231588 21603492 ~ 21605036 (+)
LOC120554665 NA coding downstream 240015 21611919 ~ 21612646 (+)
G236441 NA non-coding upstream 22277 21246564 ~ 21345168 (+)
G236455 NA non-coding upstream 36962 21296177 ~ 21330483 (+)
G236446 NA non-coding upstream 120321 21193603 ~ 21247124 (+)
G236440 NA non-coding upstream 133472 21152413 ~ 21233973 (+)
G236448 NA non-coding upstream 143752 21197425 ~ 21223693 (+)
G236492 NA non-coding downstream 1217 21373121 ~ 21373379 (+)
G236443 NA non-coding downstream 3533 21375437 ~ 21387338 (+)
G236438 NA non-coding downstream 4573 21376477 ~ 21378434 (+)
G236439 NA non-coding downstream 16566 21388470 ~ 21390145 (+)
G236501 NA non-coding downstream 58276 21430180 ~ 21617586 (+)
G236467 NA other upstream 6210 21302326 ~ 21361235 (+)
LOC120554011 cd59,LOC102793758,LOC101486506,LOC100705993,LOC104934006,LOC103366567 other upstream 289649 20976072 ~ 21077796 (+)
zdbf2 NA other upstream 402860 20956949 ~ 20964585 (+)
G236394 NA other upstream 450668 20912655 ~ 20916777 (+)
cavin2b NA other upstream 480076 20845648 ~ 20887369 (+)
G236461 LOC102792843 other downstream 36023 21407927 ~ 21422915 (+)
G236459 LOC103360213,LOC106936810,LOC103477369,LOC103473932,LOC106933094,LOC107835021,LOC108249964,LOC107380983,LOC108250351,LOC108242155,LOC108250349,LOC108229490 other downstream 52381 21424285 ~ 21634001 (+)
G236530 NA other downstream 250594 21622498 ~ 21623439 (+)
G236466 NA other downstream 254034 21625938 ~ 21633849 (+)

Expression


Co-expression Network