LOC120554740 (si:ch211-114n24.6,LOC107581392,LOC107659977,LOC107659949,LOC108436424,LOC103034569,LOC102213574)


Basic Information

Item Value
gene id LOC120554740
gene name si:ch211-114n24.6,LOC107581392,LOC107659977,LOC107659949,LOC108436424,LOC103034569,LOC102213574
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2350544 ~ 2352359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793758.1
CAGGAATTTATAATCATGGCCGGCGTCCAAATGGGAAATGCATGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCCGATGGTCAGATGCCCAGTGACAAGACCATCGGAGGAGGAGACGACTCCTTCAACACCTTCTTTAGTGAGACTGGAGCTGGCAAACATGTTCCCAGAGCCGTCTTTGTGGACTTGGAGCCAACAGTCATTGATGAGGTCCGTACAGGAACCTACCGCCAGCTCTTCCATCCTGAGCAGCTGATCACCGGAAAGGAAGATGCAGCCAACAACTACGCTCGTGGTCACTACACCATCGGCAAGGAGATCATCGACCTGGTTCTTGACAGGATTCGTAAACTGGCTGACCAATGCACAGGGCTCCAAGGGTTCCTCATCTTCCACTCATTTGGAGGAGGAACCGGCTCAGGCTTCACCTCTCTGCTGATGGAGCGTCTCTCTGTTGATTACGGCCAAAAGTCCAAACTCGAGTTTGCCATCTATCCAGCCCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCGGACTGCGCCTTCATGGTGGACAATGAGGCCATCTACGACATCTGCCGCAGGAACCTGGACATCGAGCGCCCCACCTACACCAACCTCAACAGGCTGATTGGCCAGATCGTCTCCTCCATCACCGCCTCCCTGCGCTTCGACGGCGCCTTAAACGTGGACCTGACGGAGTTCCAGACCAACTTGGTGCCCTACCCTCGTATCCATTTCCCTCTGGCCACCTACGCTCCGGTTATCTCAGCAGAGAAGGCCTACCACGAGCAGCTCACTGTGGCTGACATCACCAACGCCTGCTTCgagccagccaatcagatggtGAAATGCGACCCTCGCCACGGCAAGTACATGGCCTGCTGTCTCCTGTACCGCGGTGATGTAGTGCCCAAAGATGTCAACTCTGCCATCGCCACCATCAAAACAAAGCGCACCATCCAGTTTGTGGACTGGTGTCCCACAGGCTTCAAGGTGGGCATCAACTACCAGCCTCCCACTGTGGTTCCTGGAGGAGACCTGGCCAAGGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACCGCCATCGCCGAGGCCTGGGCTCGCCTCGACCACAAGTTCGACCTGATGTACGCCAAGAGGGCCTTCGTCCACTGGTACGTCGGAGaggggatggaggagggagagtTCTCGGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAGGATTACGAAGAGGTGGGCACTGACAGCGTCggtgaggaaggagaggaagagtaCTAAGAGACTGACACAAGGAGTTAAATGTATTCACGCAACTGTATTTCAATTGTCACAAAACTGTAACAATATTCTGTGTTTACACTTTAAAACAATAACACTATGTAGAATAAAGCAAAACTGCTAAGCATT
>XM_039793759.1
CAGGAATTTATAATCATGCGTGAATGTCTCTCTGTCCATGTTGGCCAGGCCGGCGTCCAAATGGGAAATGCATGCTGGGAGCTCTACTGCCTGGAGCACGGCATCCAGCCCGATGGTCAGATGCCCAGTGACAAGACCATCGGAGGAGGAGACGACTCCTTCAACACCTTCTTTAGTGAGACTGGAGCTGGCAAACATGTTCCCAGAGCCGTCTTTGTGGACTTGGAGCCAACAGTCATTGATGAGGTCCGTACAGGAACCTACCGCCAGCTCTTCCATCCTGAGCAGCTGATCACCGGAAAGGAAGATGCAGCCAACAACTACGCTCGTGGTCACTACACCATCGGCAAGGAGATCATCGACCTGGTTCTTGACAGGATTCGTAAACTGGCTGACCAATGCACAGGGCTCCAAGGGTTCCTCATCTTCCACTCATTTGGAGGAGGAACCGGCTCAGGCTTCACCTCTCTGCTGATGGAGCGTCTCTCTGTTGATTACGGCCAAAAGTCCAAACTCGAGTTTGCCATCTATCCAGCCCCCCAGGTGTCCACCGCTGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCGGACTGCGCCTTCATGGTGGACAATGAGGCCATCTACGACATCTGCCGCAGGAACCTGGACATCGAGCGCCCCACCTACACCAACCTCAACAGGCTGATTGGCCAGATCGTCTCCTCCATCACCGCCTCCCTGCGCTTCGACGGCGCCTTAAACGTGGACCTGACGGAGTTCCAGACCAACTTGGTGCCCTACCCTCGTATCCATTTCCCTCTGGCCACCTACGCTCCGGTTATCTCAGCAGAGAAGGCCTACCACGAGCAGCTCACTGTGGCTGACATCACCAACGCCTGCTTCgagccagccaatcagatggtGAAATGCGACCCTCGCCACGGCAAGTACATGGCCTGCTGTCTCCTGTACCGCGGTGATGTAGTGCCCAAAGATGTCAACTCTGCCATCGCCACCATCAAAACAAAGCGCACCATCCAGTTTGTGGACTGGTGTCCCACAGGCTTCAAGGTGGGCATCAACTACCAGCCTCCCACTGTGGTTCCTGGAGGAGACCTGGCCAAGGTGCAGAGGGCCGTGTGCATGCTGAGCAACACCACCGCCATCGCCGAGGCCTGGGCTCGCCTCGACCACAAGTTCGACCTGATGTACGCCAAGAGGGCCTTCGTCCACTGGTACGTCGGAGaggggatggaggagggagagtTCTCGGAGGCCAGAGAGGACATGGCTGCCCTGGAGAAGGATTACGAAGAGGTGGGCACTGACAGCGTCggtgaggaaggagaggaagagtaCTAAGAGACTGACACAAGGAGTTAAATGTATTCACGCAACTGTATTTCAATTGTCACAAAACTGTAACAATATTCTGTGTTTACACTTTAAAACAATAACACTATGTAGAATAAAGCAAAACTGCTAAGCATT

Function

symbol description
si:ch211-114n24.6 Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule.

NR:

description
LOC795591 protein, partial

GO: NA

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793758.1 False 1461 mRNA 0.55 4 2350544 2352359
XM_039793759.1 True 1491 mRNA 0.55 4 2350544 2352359

Neighbor

gene id symbol gene type direction distance location
bin1b bin1,LOC100703344,LOC102312482,LOC101065659,LOC103154120,LOC105916432,LOC107384639,LOC102793948,LOC103389239,LOC108251630 coding upstream 1102 2328511 ~ 2349442 (+)
LOC120554727 gp91phox,LOC107384631,LOC103389690,LOC100705711,LOC103372494 coding upstream 92517 2245711 ~ 2258027 (+)
LOC120554020 LOC103368590 coding upstream 243417 2100152 ~ 2107127 (+)
LOC120554798 NA coding upstream 255145 2095271 ~ 2095399 (+)
LOC120554025 NA coding upstream 318789 1964757 ~ 2031755 (+)
LOC120554738 si:ch211-114n24.6,LOC108255233,LOC101061790,LOC102793273,LOC102213860 coding downstream 1289 2353648 ~ 2356348 (+)
desmb des,LOC103366968,LOC101472777 coding downstream 55536 2407895 ~ 2417552 (+)
LOC120554571 NA coding downstream 236651 2589010 ~ 2647401 (+)
gpd2 gpd2 coding downstream 324983 2677342 ~ 2703611 (+)
LOC120554407 LOC103139210,LOC108250327,LOC102796576,LOC106535979,LOC101488115,LOC106920547,LOC106529907,LOC102199060,LOC102308458 coding downstream 403516 2755875 ~ 2781916 (+)
G231573 NA non-coding upstream 63585 2270053 ~ 2286959 (+)
G231574 NA non-coding upstream 67651 2281219 ~ 2282893 (+)
G231564 NA non-coding upstream 133932 2214653 ~ 2216612 (+)
G231555 NA non-coding upstream 154166 2196040 ~ 2196378 (+)
G231503 NA non-coding upstream 239770 2042466 ~ 2110774 (+)
G231910 NA non-coding downstream 10534 2362893 ~ 2406781 (+)
G231935 NA non-coding downstream 71571 2423930 ~ 2436263 (+)
G231940 NA non-coding downstream 94472 2446831 ~ 2448437 (+)
G231955 LOC102192810 non-coding downstream 148865 2501224 ~ 2503301 (+)
G231961 NA non-coding downstream 178515 2530874 ~ 2532587 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 251795 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 558686 1716411 ~ 1791858 (+)
G231423 agap1,LOC101478076,LOC102798364,LOC103389825 other upstream 637142 1399732 ~ 1713402 (+)
sumo1 sumo1 other downstream 136776 2489135 ~ 2494174 (+)
G232031 NA other downstream 547454 2899813 ~ 2906486 (+)
LOC120554435 NA other downstream 1201219 3553578 ~ 3590879 (+)
dock9b LOC103359855 other downstream 1988135 4340494 ~ 4399319 (+)
G232425 NA other downstream 2064805 4417164 ~ 4418102 (+)

Expression


Co-expression Network