desmb (des,LOC103366968,LOC101472777)


Basic Information

Item Value
gene id desmb
gene name des,LOC103366968,LOC101472777
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2407895 ~ 2417552 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793766.1
CCCAGGCTTTCTGAATCTTCCAACAATGGCGTCCTACAGCTCTTCCGCCCAAACTGCCTCCTCCTACCGCCGCCACTTCGGCCAAGGTAGCTACGCCTCGCCCTCCCTCAACCGCTCGCTGCTGGGCCACAGCGGGGGCGGCGGGGGCCACGTCTCCTCCAGGGTCTATGAGGTGACCCGGAGCAGCTCCACGCCGGCCTACCGCGTCTCCTCCAGCTACTTCGGGAAGCCCCTGGCCACCTCCCGGGCCTCGGTCGGCCGCTCCTACGCCGGCATGGGCGAGACGCTGGACTTCAGCCTGGCCGACGCCCTCAACCAGGAGTTCCTGACCACACGCACCAACGAGAAGGTGGAGCTCCAGCACCTCAACGACCGCTTCGCCAGCTACATCGAGAAGGTGCGCTTCCTGGAGCAGCAGAACCAGGCGCTGGCGGTGGAGGTGGAGCGCCTGCGCGGCCGCGAGCCCACACGCATCGCCGACCTGTACGAAGAGGAGATGAGCGAGCTGAGGAGGCAGGTGGAGATTGTGACCAATCAGAGGTCACGGATAGAGGTGGAGCGCGACAACCTGCTCGACGACGTTGACAAGCTCAAACTCAGACTCCAGGAGGAGATTCTCCAAAAAGAGGACGCAGAAAACAACCTGACTGCTTTCAGGGCGGATGTGGACGCTGCCACTCTGGCTCGTCTGGACCTGGAGAGACGCATCGAGACGCTGCAGGAGGAGATCGCCTTCCTGAAGAAGATCCATGAAGAgGAGATCCGCGAGCTGCAGATGCAGATGCAGGAGTCTCAGGTGCAGATCCAGATGGACATGTCCAAGCCGGACCTGACGGCGGCGCCCGCGGACATCAGAGCCCAGTACGAAGGTATCGCCGCCAAGAACATCTCTGAGGCCGAGGACTGGTACAAGTCCAAGGTGTCCGACCTGAACCAGGCAGTGAGTAAAAACAACGAGGCGCTGAAGCAGGCCCGGCAGGAGACCATGGAGTTCAGGCACCAGATCCAGTCCTACACCTGCGAGATTGATTCGCTGAAAGGCACCAACGAGTCCCTGATGAGGCAGATGAGGGACATGGAGGACCGGCACGGACGTGAGGCCAGCGGTTTCCAGGACAACATCGCCCGGCTGGAGGCGGAGATCGCCAACATGAAGGACGAGATGGCACGCCACCTCCGCGAGTACCAGGACCTGCTCAACGTCAAGATGGCGCTGGACGTGGAGATCGCCACCTACAGGAAGCTGCTGGAAGGGGAGGAGAGCAGGATTACCTTGCCTGTGCAGAGCTACTCCACCCTGAGCTACAGAGAGACCAGCCCCGAGCACCAGCAGCGCTCCTCTGAGATGCATTCAAAGAAAACGGTCCTCATCAAGACCATCGAAACCCGCGATGGAGAGGTCGTCAGCGAGTCCACGCAGCACCAGAAAGACATCATGTAACGGTCTGTGGGAGAGAAGAtaagaagaaacaaaaaaaacaccacatctGTCCTTCTCGGAGTCTGacagaagaacacaaacaagaaAAGATGAGCGAATAAAACTAAAAGTCAAAAGAC

Function

symbol description
des Enables cytoskeletal protein binding activity and identical protein binding activity. Involved in intermediate filament organization. Located in several cellular components, including intercalated disc; myofibril; and sarcolemma. Implicated in intrinsic cardiomyopathy (multiple) and myopathy (multiple). Biomarker of dilated cardiomyopathy; mitral valve prolapse; and myofibrillar myopathy 1.

NR:

description
PREDICTED: desmin-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07610 DES; desmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793766.1 True 1560 mRNA 0.60 10 2407895 2417552

Neighbor

gene id symbol gene type direction distance location
LOC120554738 si:ch211-114n24.6,LOC108255233,LOC101061790,LOC102793273,LOC102213860 coding upstream 51547 2353648 ~ 2356348 (+)
LOC120554740 si:ch211-114n24.6,LOC107581392,LOC107659977,LOC107659949,LOC108436424,LOC103034569,LOC102213574 coding upstream 55536 2350544 ~ 2352359 (+)
bin1b bin1,LOC100703344,LOC102312482,LOC101065659,LOC103154120,LOC105916432,LOC107384639,LOC102793948,LOC103389239,LOC108251630 coding upstream 58453 2328511 ~ 2349442 (+)
LOC120554727 gp91phox,LOC107384631,LOC103389690,LOC100705711,LOC103372494 coding upstream 149868 2245711 ~ 2258027 (+)
LOC120554020 LOC103368590 coding upstream 300768 2100152 ~ 2107127 (+)
LOC120554571 NA coding downstream 171458 2589010 ~ 2647401 (+)
gpd2 gpd2 coding downstream 259790 2677342 ~ 2703611 (+)
LOC120554407 LOC103139210,LOC108250327,LOC102796576,LOC106535979,LOC101488115,LOC106920547,LOC106529907,LOC102199060,LOC102308458 coding downstream 338323 2755875 ~ 2781916 (+)
LOC120554411 lrrc3,LOC103365961,LOC100701732 coding downstream 369874 2787426 ~ 2790673 (+)
trnar-ccu_18 NA coding downstream 391960 2809512 ~ 2809584 (+)
G231910 NA non-coding upstream 1114 2362893 ~ 2406781 (+)
G231573 NA non-coding upstream 120936 2270053 ~ 2286959 (+)
G231574 NA non-coding upstream 125002 2281219 ~ 2282893 (+)
G231564 NA non-coding upstream 191283 2214653 ~ 2216612 (+)
G231555 NA non-coding upstream 211517 2196040 ~ 2196378 (+)
G231935 NA non-coding downstream 6378 2423930 ~ 2436263 (+)
G231940 NA non-coding downstream 29279 2446831 ~ 2448437 (+)
G231955 LOC102192810 non-coding downstream 83672 2501224 ~ 2503301 (+)
G231961 NA non-coding downstream 113322 2530874 ~ 2532587 (+)
G231908 LOC106524675,LOC101166777,LOC104929096,LOC107396539,LOC106920551,LOC102795669,LOC102310614 non-coding downstream 236417 2653969 ~ 2658485 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 309146 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 616037 1716411 ~ 1791858 (+)
G231423 agap1,LOC101478076,LOC102798364,LOC103389825 other upstream 694493 1399732 ~ 1713402 (+)
sumo1 sumo1 other downstream 71583 2489135 ~ 2494174 (+)
G232031 NA other downstream 482261 2899813 ~ 2906486 (+)
LOC120554435 NA other downstream 1136026 3553578 ~ 3590879 (+)
dock9b LOC103359855 other downstream 1922942 4340494 ~ 4399319 (+)
G232425 NA other downstream 1999612 4417164 ~ 4418102 (+)

Expression


Co-expression Network