LOC120554784 (LOC106527415,LOC107377197,LOC103370263)


Basic Information

Item Value
gene id LOC120554784
gene name LOC106527415,LOC107377197,LOC103370263
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 3578746 ~ 3581403 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793810.1
atggacagcccgCTCCATTTCGGTACCATGCACAGCTCTTTCAGCACAACAAACATCACCCTCCATtccagcaccatggacagctcttatagcaccatggacagcaccCTCCATTCTAGCACCATGGGCAGctatttcagcaccatggacagtaCCCTCCATtccagcaccatggacagctctTTCAGAACCAGACAGCACCCCTCTGTTTTAGTGAAAGTAGGCTACGCCATGCGGGATCTGGTGAACCGGCTGCCCGGCGGCAGTCCGACGTCGCTGTCGGACGAGACGGTGGTGTCGGTCTGCTGCACGCTGCACGAGGTCACCAGCCGTAACATGGCGAACGCCAAAGCTCTGGCCGACAGCGGAGGCATCGAGAAGCTGGTGGACATCAGTAAAGGACGGGGGAAAAGGTACTCGATGAAGGTTGTGAAGGCGGCAGCGCAGGTGTTGAACACGCTGTGGCAGTACAGAGAGCTGAGGAACTTCTACAAACAGGTCGGTACCAGCAGGAACGTCTAG

Function

NR:

description
PREDICTED: plakophilin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793810.1 True 522 mRNA 0.57 3 3578746 3581403

Neighbor

gene id symbol gene type direction distance location
LOC120554783 LOC106527415,LOC107377197,LOC103370263 coding upstream 26730 3548229 ~ 3552016 (+)
LOC120554431 osbpl11 coding upstream 39705 3520732 ~ 3539041 (+)
zswim2 NA coding upstream 682891 2890550 ~ 2895855 (+)
col5a2b col5a2 coding upstream 706633 2844611 ~ 2872113 (+)
trnar-ccu_19 NA coding upstream 768706 2809968 ~ 2810040 (+)
n6amt1 n6amt1,LOC102791235 coding downstream 21494 3602897 ~ 3604527 (+)
LOC120554447 LOC102195007 coding downstream 536515 4117918 ~ 4120596 (+)
LOC120554451 LOC103372195,LOC102795276 coding downstream 598433 4179836 ~ 4198507 (+)
nop58 nop58,LOC102781044 coding downstream 654086 4235489 ~ 4241283 (+)
LOC120554799 NA coding downstream 657124 4238527 ~ 4238610 (+)
G232254 NA non-coding upstream 19787 3558403 ~ 3558959 (+)
LOC120554433 NA non-coding upstream 39705 3505847 ~ 3539041 (+)
G232211 NA non-coding upstream 215952 3332334 ~ 3362794 (+)
LOC120554428 NA non-coding upstream 223732 3315070 ~ 3355014 (+)
LOC120554423 NA non-coding upstream 311752 3266121 ~ 3266994 (+)
LOC120554443 NA non-coding downstream 66856 3648259 ~ 3650261 (+)
G232298 NA non-coding downstream 72033 3653436 ~ 3744410 (+)
G232319 NA non-coding downstream 528720 4110123 ~ 4111860 (+)
LOC120554455 NA non-coding downstream 617434 4198837 ~ 4232080 (+)
trnam-cau_63 NA non-coding downstream 619159 4200562 ~ 4200634 (+)
G232031 NA other upstream 672260 2899813 ~ 2906486 (+)
sumo1 sumo1 other upstream 1084572 2489135 ~ 2494174 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 1479997 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 1786888 1716411 ~ 1791858 (+)
G231428 NA other upstream 2082139 1487274 ~ 1496607 (+)
dock9b LOC103359855 other downstream 759091 4340494 ~ 4399319 (+)
G232425 NA other downstream 835761 4417164 ~ 4418102 (+)
scn1lab NA other downstream 1151059 4732462 ~ 4772995 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other downstream 1267235 4848638 ~ 4949089 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other downstream 1421918 5003321 ~ 5041882 (+)

Expression


Co-expression Network