txndc16 (txndc16)


Basic Information

Item Value
gene id txndc16
gene name txndc16
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 5320118 ~ 5335281 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039793812.1
AAGTGGTATGCACTACTCAAAACGTCTTAacaagtattttattttaaaacaataacagGAAGTACTGTTTTAACTCCACTAGCTTGACACTGTTTTGCGAAAAGAGCGTCATTCTCTCAagacacatttttcaaattGTATTGTGAAGCTTGGTGAAAAATAACCTTCCTTTTTCAGTGGTTTAACGTTAATTTACATCTTCCACTGACATATGCCGAGATGTAGCTTTTAAATTCGTAGCGGtttacgttagctagctagccaaaTAAAGCCATGGACAACCATCCAACAGTAGGCAGCTAACAAGCCTAGCTAATGAACCAGCCAACGTTAGCATTAACATTCCTAACTAAAGCAGAAAGCGCCATTTTTTGACTTTCTTCGGGATTAACACTCGTAGGATAAGCTGCTGCTTATAATTAGCGTCATAATGTCTTTATCTCCTTTCACCCCGGTTTTAACTGCGGTTTGTAACGTTTTTGCCACTTGGAAAGACAAAAGTTGAACATTAACCCCTCCTCGACTTTCTCAGAAAGCACAAAAGAGCCTGGTCTCCAAGATGTGGATGTGTATTGCTGTTTTCCTGCTGTGGATGAAGTCAGGAGGATGCACAGAGAAAGCGAACACATCAGACCTGATGGAATACACAGCTGCAGACTTCTATGAGAAATTGCATTCGGGGAAGatgatgtttatttattttgagcATAAAGTCTCTCCAACCATCTCTCTCTTCTTGGTGGAGTTGGAGAAGTCTGCTGATGCTCTGCAGGATTATGGAGTACTGGTTGGCAAGGTCAACTGCAATAAAGAACTGGTTCACGCATACTGCACAGAAGAACGGGTGCTGCACACAGCGTTTCTGTTCAGGGGTGGTAAAGAGTTCTTGGGTTTTGATTTGGACACTGTGTTTGACGTCAACTCCATAGTCTCTGAAGTCCTGTTTGCCATTCTGCGTGACGAGGTCAAGTACGTTCACACAGACACTGACCTGCTGGCCATGGAGAAGGCAGCCAGAGGGAAGAAGGATATCGTGCTGGGTTACGTCCGCAGTCTGGGAACACAAGAGCACAGATCGATGATGGAGACAGCGTATGTGTACGGATCCAAATACCAGTTCATCCTTATAACTGGAGGCCCAGTTTTGAAGCACTTAGGTGTTAATGAGTTGTCTCACTCGTCTCGAGTGTGGTTCCTCCACTGTAGAGTTCACAGTGGGTTTGTGATCCCGATGACGTGTCCTTTGACCCTTATGAGGAAACCCCTGTCCACCTTGAGCCTCCACTCCTTTCTGCAGCTCATGGAGGCTCCACTGGTGTCTGAGGTTTACAATGACCCCTCCTCGGTCCAGCCCCCTCAGTTCCCCTACCAGCAGACCCCCCAAGTCTTCCTGTTCTCTCGTCCCACAACCGCGCACCTGGACCTGGACACGGCCACCACTCTGGCCTGGAGGCTCCGTGGCCTTGCCCTGCTGCTGCTTGTACACAGGCTCAAGGAAAGCAAAGGAAGAGGAATGGAGATCGGGAGGAATTTGGAATGGAGGAAAGTATCCCATTTTGGCCATTTGGACGATGAAATTGCGGCGTCTGTCTACGAAAACCGAGGCGACTTGCCGGACATGGACTCAATTACCCAACTAACCTCTGACAACTTCCACACCGCAGTAGCTCAAAGCAGCCTGACAGTGGCGCTCTTCTACCTCAAATGGGATGCTGCTTCAATGGCGTTTCTCAGCTCCTTCCTTGACGTTGCAGAGGGTCTTACAGATTCCGGGGTCCAGATGAGTGCGGTCGACTGTGGAGAGTGGACCGACCTGTGTGCTGCTCAGCCGGGCAGCTCCCTCCCGATCCCGTTCCGGCCAATCACGGCCTTCCCCAGTGTCTTGTTGCTCCGCCCCCAGGAGTCGGCCCAGCACTACAGAGGCATGCTGGGTACTGAGGCGCTGCATCGCTTCATCATGCTGAGCCACCCAGCTTCTCCTGTGCTGCTGTCTACCCaagaggaagtgacatcattCCTTCAGGAAGTGCCTCACCCTGTGCTAGCAGGTTATACGCCTGACAGATTGCTGGGACTGTTTGAAACACACAGAGGTGCACCACTGTTTACTGAAGCAGCAAAGTCATTGAGAGGAGAGGTGCTGACTGGACTGCTGACAGATGGGCTTGCAGAGAAATGGGCAGCAGAGCACTCTGTGGACCTTCCTGCAGTGTTGGTGTTTCCATCTTGGAGGACACACACTCATCCTTCCGCGCTGCCTGTGTCCAGCTCTGCTGAAGAGCTGCTCTCGCACATTAACACTGCTCTGCTGCATCCACTGCCTGAGCTGACGGTGGAAAACCTGCCGTCCTTCCTCTCCCTGGGCAAAGCCCTCCTGCTCCTCTTtgtgggagaggaagaggacgaATTTGGGCGACGGCAGAACCAGGCGCTGGTGGAGGAGATGAGAGGAGTGGTAGAGTTGGGAGGGCGGAGGATGGAGCCATACCTGGCCTGCTGGATCCATCTTGGCCGTACTCCAGCCGGTATGTCTGTCCTGGGGTCATACCTGGGCTATATGCCCCCCCTCCCTGCTTTGGTCCTCACACATTTGCCCTCTGGTGGTGAAATCTACCAGTACCCCCCCAACATGCCCATAGGGGCCCCCTCTGTCCTGCAGTGGCTGCAGAGAATCGAGGATGGGACTGAGTCAGCAGCAGGGTTGTTGGGTGAGGATAGCTGGCCTCCTGCTGTCAAATTCTACGACTTCCTGAAAATCATGGACATGCAGGAACCCAACTCCGCCCAGCAGCAAACTcctgaagaggaagaggaggaggaggaggtggtggacgAGAAAGAGGTGAACATGGAAGAAGATGTGTTAGAAGAAGCGACAGATTCCTCCTCCAGCTCTCCCACTCCTAACAACAACCCTCACTCTGAACTGTAACACaacaggatgggagaaaaatgatACTAAGCCGTtggttaaacatttttatttcttcttcatttttattctttttactaATATTATCATGCTGTATTTATCATACGAGATTCATTATTTCCCTTTGGATTTTATTGCCAGATTGGAAAAGATGTATCAAAAAGACCCACAATGCAACGGATTAATAAAAGACACTGTGAACTTTGGAGTAAAAGGCAGTTGTAATATGAGTTAACACCTTTCTGTAGGCGTTTCCTCGGGGGTGTTTACGGGAAAGTTAAGTTTAATCTGTTTCTTCCTGCTGTGGTTTTGTGATAGATTCCTGGTGAACTGATGACATGATTAACTCATTtgaactcatttaaaaaaaaacaaaaaaaactatgtgACACTATCTGTgtcttttttcttcagtttAGCTCAGCTGGTAAAGCAAACCACAGCAAGTTTGGAACCTGAGGGAGGTGGTTCAGCACCAGGCTGGTTGTGGTTTCTTAAAATAGTTTATTTGAAAGGTTACAAACAAattatgctgtttttttaatcaacaaaGGCATGTTTCCAATGTTGTCATTTAACTGTTACCACTGTATGGATATTGCAGTGACTTTAGGTGAAGGATATTTATGTCCTGGGTTATTTTTCCCATCATTCCACCTCCTGTCCCCAAATGACGAAGGAGGTGGAATAGGTTGCTTGGAATTagtttgttttaattattatgGTGGTTTCAGATGTGGTTTCAGGAAGTTGTTTGAATCAACTAGTCTCAGTTAAAAGGGAACATCCTTCCTAAACAATGTACTTGTAGGATCCTAAGGGCTCTTGTGGTTTAGGGCAGATTTTCTTTTGAACCCATGTGAATCTTCAGCCTCAGTCTTTATCTTTTGTCCAATTACTGGCTTTATCTTTGCAAGCCGATGGACTGAGCATATGATCCATGGACTGGCAGTTTAGATGGTGTTTTGATGCTGTGGGGGCTTGGTTTATCATACATACAATAAAAGAGAACATTAAACACAAGCTATAATGACATTCAATTCatcaatctcatattttgaggTTTAAGGTATACACGTTTAGCTAGACAACGGCATCGGGACGTCTTCTGAAGTGTTCTCACTTGAACACAGTAATCCTCAAATTGATGTAtttatgtaaaacaaaatgtattaaattctGTCACTTAAATACTTTATCAAACGTGCGAAACAGCGACCCACTTTATTGCAACGGTTGGTGCATGTTAGCCAGTCTGTGTGGTTAAAAGACGACATTGCGGCCTTTGCACATTGCACATTAGTCTACCGAGAAGAGGCCAGGTGaagttaattaaaaaacaaaggaTTCAACGAGATGCGCGGTTACTATCATGGCACTGTGACTGCGAAACTGAAGTCAAGTGTGAACCCCGTCACGGTGTGGCCTCAGAACAAACCTGTTAATTTAGTAGAATTCCAATGAAACAAGTGTGAAAGTTAGAGTTCGGTAATGTTAAGTTATTATAACGGTTAATGcgaacatactgtataaaactAGGTTGAGAAAGATATCAGCTAACTGCGGTTTTGTAAAAcaagttagttagctagctagcagccatGGAGGTGAGGAGTACTGTCAATATGGATACTTAATTTAAATGAAAGAAAGGAGAATTGACTTGGACGCCAAATAACGTGAGTCAGATACTCTACgtctctgtgttgtctgtctTTGCTAGCCTTGCTAACCTAGCTGATCTCTTTCCTGAACTCATTGCTGTGTGTAGCTACATGTTAATATTACGGAGGTTACATTCTGTACTGAATTGAGCTTCTGTTTGGTCTTTGAGTTGCTTGAACCAGTTCATACTTTtgctacattttgtttttaagctGTGCTGTGTATTGAGTAGTGGCGAGTTAATAACTTAAGTTGAATACTGTCTGCCTTCAGGCTCATTTTTATGTGTATGTCATgtgttttatacatgcattgATACGTTTTTGATGCAAAGATAAACATTTTAGTATCAAGTAAGCTACTGATCTGTATCTGATTTGTGGTATATTTGTTTATGCTAATACAATACATGTGCAAGTCA

Function

symbol description
txndc16 Orthologous to human TXNDC16 (thioredoxin domain containing 16).

NR:

description
thioredoxin domain-containing protein 16 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039793812.1 True 5018 mRNA 0.45 19 5320118 5335281

Neighbor

gene id symbol gene type direction distance location
acp2 acp2 coding upstream 13381 5293167 ~ 5306737 (+)
LOC120554463 abcc4,LOC102196569,LOC100702162,LOC102309803 coding upstream 153924 5134856 ~ 5166194 (+)
dzip1 LOC102776338 coding upstream 211213 5094251 ~ 5108905 (+)
LOC120554486 NA coding upstream 265136 5051007 ~ 5054982 (+)
LOC120554477 LOC103354588,LOC106960074,LOC106930318,LOC103147191,LOC103474384 coding upstream 269256 5044021 ~ 5050862 (+)
nid2a LOC103358232 coding downstream 47882 5383163 ~ 5428369 (+)
LOC120554521 LOC106575534,LOC106575594 coding downstream 109371 5444652 ~ 5455756 (+)
poglut1 poglut1 coding downstream 243685 5578966 ~ 5584996 (+)
timmdc1 NA coding downstream 249742 5585023 ~ 5591908 (+)
LOC120554531 LOC100701074,LOC102304238,LOC102791267 coding downstream 259872 5595153 ~ 5645844 (+)
G232704 NA non-coding upstream 44865 5270787 ~ 5275253 (+)
G232699 fam155a,LOC104929881,LOC100704860,LOC101466237,LOC102313546,LOC102786507 non-coding upstream 113130 5202901 ~ 5206988 (+)
G232680 NA non-coding upstream 128828 5150983 ~ 5191290 (+)
G232688 NA non-coding upstream 136015 5183223 ~ 5184103 (+)
LOC120554496 NA non-coding upstream 139850 5172389 ~ 5180268 (+)
LOC120554562 NA non-coding downstream 293119 5628400 ~ 5630828 (+)
G232682 NA non-coding downstream 295647 5630928 ~ 5633017 (+)
G232741 NA non-coding downstream 300720 5636001 ~ 5636547 (+)
G232742 NA non-coding downstream 334137 5669418 ~ 5672548 (+)
G232747 NA non-coding downstream 376427 5711708 ~ 5712017 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other upstream 278236 5003321 ~ 5041882 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other upstream 371029 4848638 ~ 4949089 (+)
scn1lab NA other upstream 547123 4732462 ~ 4772995 (+)
G232425 NA other upstream 902016 4417164 ~ 4418102 (+)
dock9b LOC103359855 other upstream 920799 4340494 ~ 4399319 (+)
LOC120554524 nhlh2,LOC104936900,LOC103370041,LOC108245682,LOC101487065,LOC107087002 other downstream 152880 5488161 ~ 5498524 (+)
LOC120554525 vangl1,LOC102194868,LOC101486397,LOC102297404 other downstream 173807 5509088 ~ 5568201 (+)
fdx1 fdx1 other downstream 469754 5805035 ~ 5813194 (+)
LOC120554182 steap3,LOC103360323 other downstream 1106414 6441695 ~ 6453327 (+)
LOC120554601 mest other downstream 3286824 8622105 ~ 8628297 (+)

Expression


Co-expression Network