LOC120554031


Basic Information

Item Value
gene id LOC120554031
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19371461 ~ 19373577 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638282.1
GTTTGGGTTCCTCCTCCAAcgctttttcttttcctccgagGCGGGAGACCACTCATGGAAAAGCTGAAGCGGTTGAATATGGAGGACTTTGTTAAACTAAAGTTAACAGAACGGCAACTTCTGGAGCTGATTGACACTTTTGCAGATTGCGCAGGACTTCGAGGTCCTTCATAAAGAGGCATCAGACTAAATGTTTGACCTGGAGGAGGTTCAGCGTGAAGCTTCTTCATGCGGCCCAGCGGGGGGGGGAGCTCCAGGTGCAGACAGAGTCTTTGTCTCAAGGCTCCAAAGACTACATTGCCCTGATGGTTCTGCCAGGTCTGATTCCACCTGCAGTCTTCAGGATGGGCCGAAAGACCGTGAGGACTACAGTGTCTGACGCCATGAAGGCCTTCATCGATCTTAAGCCTGTCGGATGGTGGATACCTTCAGGCAGCAGACCAGACCATACCCCTGCACCCTGGTGTTGGGAGGCGAGGACTGCTGCTCACAGCCATTCACCGTTCTCAGTGGGCCGGCCCTGGAGCACTACAGCGACGTCCAAGCTGTACATGTTTGTTTCAAATGTTTACATGTGTTTGatacagaggtgtcaagtaacgaagtatttgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638282.1 True 614 lncRNA 0.52 5 19371461 19373577

Neighbor

gene id symbol gene type direction distance location
acvr2ab acvr2a,LOC102784913,LOC103371821 coding downstream 848445 18465948 ~ 18523016 (-)
LOC120554003 LOC103370269 coding downstream 969248 18357104 ~ 18402213 (-)
LOC120554329 LOC100698054,LOC102783597 coding downstream 1018118 18342713 ~ 18353343 (-)
LOC120554384 NA coding downstream 1031042 18328508 ~ 18340419 (-)
LOC120554369 LOC104960229 coding downstream 1101792 18262836 ~ 18269669 (-)
kynu kynu,LOC102785701 coding upstream 177859 19551436 ~ 19581258 (-)
bzw1a LOC107384676,LOC108245120,LOC107082828,LOC103371116,LOC101480137,LOC103457358 coding upstream 235045 19608622 ~ 19621651 (-)
aox6 NA coding upstream 248525 19622102 ~ 19654312 (-)
pnpla4 pnpla4 coding upstream 375494 19749071 ~ 19755969 (-)
dhrsx dhrsx,LOC104961879,LOC108244136,LOC106908010,LOC106908011 coding upstream 1002016 20375593 ~ 20380492 (-)
G235957 NA non-coding downstream 110629 19260568 ~ 19260832 (-)
G235948 NA non-coding downstream 193661 19177445 ~ 19177800 (-)
G235947 NA non-coding downstream 215951 19155134 ~ 19155510 (-)
G235946 NA non-coding downstream 236328 19134877 ~ 19135133 (-)
G235937 LOC106936898 non-coding downstream 266136 19037318 ~ 19105325 (-)
G235978 NA non-coding upstream 129587 19503164 ~ 19503399 (-)
LOC120554578 NA non-coding upstream 159299 19532876 ~ 19547476 (-)
G236017 NA non-coding upstream 189294 19562871 ~ 19564181 (-)
G236018 NA non-coding upstream 191540 19565117 ~ 19565436 (-)
G236020 NA non-coding upstream 192614 19566191 ~ 19607516 (-)
LOC120554371 mbd5,LOC102784158 other downstream 932043 18404226 ~ 18439418 (-)
LOC120554370 LOC103370263 other downstream 1044358 18271078 ~ 18327103 (-)
s100b LOC103360204,LOC104927403 other downstream 1626204 17734731 ~ 17745257 (-)
G235350 NA other downstream 2267944 17064302 ~ 17103517 (-)
trnat-cgu_19 NA other downstream 2615396 16755993 ~ 16756065 (-)
LOC120554050 f2,LOC106587117,LOC106561958,LOC100136077,LOC101463683,LOC102200345,LOC102207201 other upstream 149927 19523504 ~ 19529242 (-)
G236111 sts,LOC108241831 other upstream 357742 19731319 ~ 19732537 (-)
G236277 adarb1,adarb1b,LOC105907970,LOC107754003 other upstream 993764 20367341 ~ 20368433 (-)
G236340 NA other upstream 1352826 20726403 ~ 20728427 (-)
G236349 NA other upstream 1387131 20760708 ~ 20760992 (-)

Expression


Co-expression Network