LOC120554032


Basic Information

Item Value
gene id LOC120554032
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 19318304 ~ 19395896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638283.1
CGGTTCTCCTGTCGCAGGCTGGATCTCACTTCTCTTGTTTGATATCTCCTCGCTCCACGGCTGAACCAGAAGTTGTTCTGGCCCTCCttcgtgaaggccgtctcaaagctcttattcctgccccgaggagcgaggatggaggagggatctctgagggaGCTACGAGCGAGGATACAAATTCACGTGACGCATTCAGAGCATGTCCATACACTTGTAGGCGTTGCACAGCGTGAGCACGTCTGCATGTTACTCCTCTGCGACTGTTAGTGGGTCCGCATGTGACTGCCTCCGCTGGGTCCCAGCGGGGGGGCTGCGGGTGGCCCCGCCCACCCCAGGCCGGTTCCAGCCAATCAGGTGCTAATGTGCGGGAACAGGAGAGGGCTGCGCTGACAGATGGCCGGCTGACCTGGAAAACCTGCCCCCCTTTTCAGGGTTCAGCAGTCGGCAGATGACAGAGAGGTCAGAAGTCAGGGCCACAGCTTCACATCGCACACAAGTAATGGAGTGAAAAACCTGCTGT
>XR_005638284.1
CGGTTCTCCTGTCGCAGGCTGGATCTCACTTCTCTTGTTTGATATCTCCTCGCTCCACGGCTGAACCAGAAGTTGTTCTGGCCCTCCttcgtgaaggccgtctcaaagctcttattcctgccccgaggagcgaggatggaggagggatctctgagggaGCTACGAGCGAGGATACAAATTCACGTGACGCATTCAGAGGTGCTGCCGGCTGCGCGGggagaagatgaaaaaaaaaggatgttcTCGTGTGTAGCGTGCGCCCTTTGGCATGTCCATACACTTGTAGGCGTTGCACAGCGTGAGCACGTCTGCATGTTACTCCTCTGCGACTGTTAGTGGGTCCGCATGTGACTGCCTCCGCTGGGTCCCAGCGGGGGGGCTGCGGGTGGCCCCGCCCACCCCAGGCCGGTTCCAGCCAATCAGGTGCTAATGTGCGGGAACAGGAGAGGGCTGCGCTGACAGATGGCCGGCTGACCTGGAAAACCTGCCCCCCTTTTCAGGGTTCAGCAGTCGGCAGATGACAGAGAGGTCAGAAGTCAGGGCCACAGCTTCACATCGCACACAAGTAATGGAGTGAAAAACCTGCTGT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638283.1 False 520 lncRNA 0.58 3 19318304 19395896
XR_005638284.1 True 589 lncRNA 0.58 4 19318304 19395896

Neighbor

gene id symbol gene type direction distance location
zeb2b zeb2,LOC103355929 coding upstream 190650 19024148 ~ 19127654 (+)
orc4 orc4 coding upstream 865302 18444179 ~ 18453002 (+)
LOC120554001 LOC103375332 coding upstream 1079879 18188650 ~ 18238425 (+)
LOC120554264 LOC103360215,LOC103389527,LOC101479567,LOC101064475 coding upstream 1481402 17835894 ~ 17836902 (+)
LOC120554200 sh3bp4,LOC103360214 coding upstream 1510551 17775532 ~ 17807753 (+)
LOC120554051 xdh coding downstream 117006 19512902 ~ 19522669 (+)
LOC120554004 NA coding downstream 189639 19585535 ~ 19599669 (+)
si:ch211-246m6.4 LOC103371115,LOC103149479,LOC104942297 coding downstream 206825 19602721 ~ 19607000 (+)
sts sts coding downstream 316788 19712684 ~ 19732543 (+)
LOC120554574 NA coding downstream 420869 19816765 ~ 19818483 (+)
G235956 NA non-coding upstream 57443 19260568 ~ 19260861 (+)
G235926 NA non-coding upstream 140515 19177469 ~ 19177789 (+)
G235924 NA non-coding upstream 173867 19144221 ~ 19144437 (+)
LOC120554064 NA non-coding upstream 175857 19139865 ~ 19142447 (+)
G235912 NA non-coding upstream 189128 19127693 ~ 19129176 (+)
G235974 NA non-coding downstream 93453 19489349 ~ 19489734 (+)
G235975 NA non-coding downstream 95515 19491411 ~ 19491663 (+)
G235982 NA non-coding downstream 121046 19516942 ~ 19517407 (+)
G235983 NA non-coding downstream 121571 19517467 ~ 19517931 (+)
G235993 NA non-coding downstream 141242 19537138 ~ 19537991 (+)
G235778 NA other upstream 1136492 18176825 ~ 18181812 (+)
G235775 NA other upstream 1146350 18167286 ~ 18171954 (+)
LOC120554216 mpp4 other upstream 1352078 17953139 ~ 17966226 (+)
als2b NA other upstream 1379993 17882465 ~ 17938311 (+)
trnat-cgu_25 NA other upstream 2366535 16951697 ~ 16951769 (+)
anos1a LOC103358938 other downstream 275976 19671872 ~ 19698895 (+)
nlgn4xa nlgn4x,nlgn4a,nlgn4,LOC102297792,LOC102198379,LOC102795219 other downstream 501196 19897092 ~ 19986729 (+)
G236162 NA other downstream 600903 19996799 ~ 19997667 (+)
prkx prkx other downstream 812433 20208329 ~ 20234852 (+)
LOC120554192 adarb1,dhrsx,LOC103363325,LOC104961879,LOC106908010,LOC106908011,LOC103156197,LOC103156196 other downstream 959406 20355302 ~ 20377740 (+)

Expression


Co-expression Network