LOC120554065 (samd3,LOC101476819)


Basic Information

Item Value
gene id LOC120554065
gene name samd3,LOC101476819
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14129753 ~ 14131767 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638303.1
GTGGCGCTAATTTGCACACTACACTGATTCCTTACCGCtctttggaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGCAATCAGGCTCACTGGACTTActtttcaagaagttaaggaagataactggagatgtgataacgataccagaagactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACACCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggcatcaaaaactgGGAAGACAGCAGATGCTCTGGCTGAAATTTTAAAA
>XR_005638304.1
GTGGCGCTAATTTGCACACTACACTGATTCCTTACCGCtctttggaaaaacacagaagaagaaaagtttgaacAACGCAGCAAGGCGGGAAGCAGCAGACAGTAGGGTTGCAGAAACTACCTACGCAGCAGCAATCAGGCTCACTGGACTTActtttcaagaagttaaggaagataactggagatgtgataacgataccagactgagaagaaACTGCCCCTCATTAGAAAGATGATGGAGACCACATTTCCCCTACACCGACAGACCATAGTGATGTCCTGCCCACCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTCAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGACCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggcatcaaaaactgGGAAGACAGCAGATGCTCTGGCTGAAATTTTAAAA

Function

symbol description
samd3 Orthologous to human SAMD3 (sterile alpha motif domain containing 3).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638303.1 True 492 lncRNA 0.47 4 14129753 14131767
XR_005638304.1 False 489 lncRNA 0.47 4 14129753 14131767

Neighbor

gene id symbol gene type direction distance location
gtf3c3 gtf3c3 coding downstream 42271 14010265 ~ 14087482 (-)
hecw2b hecw2 coding downstream 121330 13797432 ~ 14008423 (-)
LOC120554288 NA coding downstream 148383 13980051 ~ 13981370 (-)
LOC120554566 NA coding downstream 417919 13706250 ~ 13711834 (-)
trnag-gcc_27 NA coding downstream 1017525 13112158 ~ 13112228 (-)
LOC120554388 NA coding upstream 158906 14290673 ~ 14299690 (-)
slc19a2 slc19a2 coding upstream 225063 14356830 ~ 14399370 (-)
atg3 atg3 coding upstream 269098 14400865 ~ 14419991 (-)
LOC120554074 ddrgk1 coding upstream 302541 14434308 ~ 14446096 (-)
LOC120554302 ube3a coding upstream 413973 14545740 ~ 14569910 (-)
G234641 NA non-coding downstream 38493 14090939 ~ 14091260 (-)
G234638 NA non-coding downstream 40543 14089007 ~ 14089210 (-)
G234586 NA non-coding downstream 316569 13810384 ~ 13813184 (-)
G234527 LOC104966508 non-coding downstream 625267 13498088 ~ 13504486 (-)
G234526 dmd non-coding downstream 631886 13486967 ~ 13497867 (-)
G234673 NA non-coding upstream 48938 14180705 ~ 14181025 (-)
G234675 NA non-coding upstream 57328 14189095 ~ 14189401 (-)
G234676 NA non-coding upstream 58264 14190031 ~ 14190238 (-)
G234736 NA non-coding upstream 165313 14297080 ~ 14297377 (-)
G234752 NA non-coding upstream 224328 14356095 ~ 14356400 (-)
G234405 NA other downstream 1175628 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 1836610 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 2591432 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 2640276 11458937 ~ 11489477 (-)
spega LOC103358966 other downstream 2687827 11388552 ~ 11441926 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other upstream 62545 14194312 ~ 14290043 (-)
G234898 NA other upstream 716067 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 834549 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 2116927 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 2194326 16326093 ~ 16352877 (-)

Expression


Co-expression Network