LOC120554077


Basic Information

Item Value
gene id LOC120554077
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 14448891 ~ 14461751 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638308.1
TGCCTGTTGGTTGTCACATGGGACCATCTCTCTGACATTTAGCAGTCTGCTGCCTGCCTGACTGTTGTCTGCTTGGGCCTGGAAAGGATTCCAAGCTCCCCTGCCTGGAGTGGTGTGATGAATTCCCTCTTAGCCTACTGAGTACATTTGAGTGAAGGGTCCATCTGTTGAGTTGCTGGAGCAATGTAATAAAGAGCAGCTGAAGAAGATTGCTCAGCATTACTCTATTAATGTTGACCTCAAGCGCACAAAGGAGGCCCTGAAGTGTGTCATTATGGCCAACTTGACGGAAGAGAAAGTGTTGGGGGACGAGGGAGgttgtgGTGGGACCTTGTTCTTGAGAAGGGGGTGTGATGGCCCCTAGGCCTATTAAGTCCCTTTGATTGCTGGGATCTGGGCTAATGAGGACTGATGATTGACACCTGGATCAACTGATTGCTCACATGTCTATAAATAGGAGTGCTTAGGCAGTCATTATCTCTCCCTCTTCAAGGTTGCTTGGTTTGTTTGGATTTTGGATTTAGTTTGTTTTGCGTTCTAGCTTTGATACATCTACAGACATccatacattacacacattactgaTTAACTGATTTCATGTTTATCTTTGTTAATTTAAATAGATTTGATTTAAGTGAACAAACATGTGTGTCTCCACCTTTTGTCATGCCTTTGAGCCAGGTCATGACAACCCTCTTGAAGCAAATTGTTTCAAAAAGTTCCAGTGCAgggtaagaaattaataattatttgatttaatagtTTGTAGGGACGTGTTTGGGAGGGGAGAAGGAGGTGTagtattttgtgtgttgtgtaaaatgttctaaataacAAGATGGTCTAAGTAAATGGGATAAATAGGTTAGGAATAATTTTTAtaactaaaataattttttgtttttgcagtaCTGAAAAAAGTACCGTTTGGTATCGGAACCGCATTTGacattatgcaaaaaaaagtgaatgGTACCCAAACCTGTAGGTCATGACCTTCCCTCCCCCACCCCGATTTCCACCTATGAGTGGAAAGATCAGGACCACTGAcgtattttcaaacttgtaaaAATTGCGGACGAGGAAGCTTCAGTGGTTGCAATTGAAACGGCAAACACCGAACTatacaaatgtaatttatacatattttttttaaataaggacACTGTA

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638308.1 True 1170 lncRNA 0.41 4 14448891 14461751

Neighbor

gene id symbol gene type direction distance location
cars2 cars2 coding upstream 14275 14420009 ~ 14434616 (+)
arl6ip6 NA coding upstream 123070 14305969 ~ 14325821 (+)
dmd dmd,LOC101067548 coding upstream 762287 13216211 ~ 13686604 (+)
LOC120554796 NA coding upstream 1303673 13052363 ~ 13145218 (+)
LOC120554176 NA coding upstream 1444088 12996051 ~ 13004803 (+)
LOC120554078 LOC105905688,LOC102213723,LOC102296852 coding downstream 22417 14484168 ~ 14486243 (+)
atp1b1b LOC104936446,LOC103355854,LOC103389586 coding downstream 37533 14499284 ~ 14508412 (+)
LOC120554303 LOC107101608,LOC103355870,LOC103477065,LOC106935410,LOC107832892,LOC106932269 coding downstream 70039 14531790 ~ 14544618 (+)
ddx4 NA coding downstream 109375 14571126 ~ 14586743 (+)
ccdc14 NA coding downstream 127311 14589062 ~ 14598938 (+)
G234763 NA non-coding upstream 2629 14438958 ~ 14446262 (+)
G234721 NA non-coding upstream 92213 14356076 ~ 14356678 (+)
G234720 NA non-coding upstream 95241 14353419 ~ 14353650 (+)
G234715 NA non-coding upstream 116117 14332562 ~ 14332774 (+)
G234714 NA non-coding upstream 116385 14332158 ~ 14332506 (+)
G234777 NA non-coding downstream 11697 14473448 ~ 14473683 (+)
G234838 NA non-coding downstream 183851 14645602 ~ 14646219 (+)
G234841 NA non-coding downstream 186373 14648124 ~ 14649049 (+)
G234869 NA non-coding downstream 404554 14866305 ~ 14887613 (+)
G234895 NA non-coding downstream 541878 15003629 ~ 15013712 (+)
G234651 NA other upstream 304021 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 1246079 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 1423371 13002963 ~ 13025520 (+)
LOC120554049 ect2l other upstream 1651237 12786641 ~ 12797654 (+)
LOC120554058 obsl1,LOC102777652 other upstream 2079670 12358027 ~ 12369221 (+)
LOC120554715 LOC103355859,LOC104964875 other downstream 344776 14806527 ~ 14910075 (+)
LOC120554227 NA other downstream 567087 15028838 ~ 15042444 (+)
LOC120554234 NA other downstream 1926946 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 2294814 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 2298607 16760358 ~ 16760430 (+)

Expression


Co-expression Network