LOC120554109


Basic Information

Item Value
gene id LOC120554109
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 10837792 ~ 10848355 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638315.1
CAAACGCACTCGCAGGTGGACTCGTGGAGAATCCTGTTGGGCCCACAGAGAGCCAGCAGACCTGAGTCCAGCGCCTCTGGAAGCCACATGGAAAGGAGgTGATCTGATGCAGCTCGTCTTATGATGGAGTGGAGCGGCCGCTTGGAGAGGCATTCGCACGAAGTGTGGTTGACGAAGGATACCATGACGACGGAGCGATCCATCCTGGGCGGGGACAGTTCCATCAACTGGCAGGAGGAAAGATGAagGCTGCCTGATCCTTGGAAAAGcatcaaagagagagaaaaaagagggaaGAGCTTATTCCAAATCCTGTTTCCAAatggagttaaaaaaagaaagaaaagaaagGCGAAGCAGTTACCGAcaactgtaaaataaattatggggaagatggacagacagacagacagacagacgagaaAAGAAGGAGAGGGCCGACGACAAGGAAGGAGAAAGAGGTGTGTCTGGGAAACGCTCGAATGAGAAAACATCCGATTTTTGGGCCAGTCACTGCCAGCCTTTTCAAGGATTAAAGACGCACacccccgcacacacacacatacatacgcacgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638315.1 True 576 lncRNA 0.51 4 10837792 10848355

Neighbor

gene id symbol gene type direction distance location
LOC120554097 LOC100699868,LOC108246800,LOC102211082,LOC101482602,LOC102799187,LOC106525709 coding downstream 51939 10784874 ~ 10785853 (-)
LOC120554100 LOC103371276,LOC104950903,LOC100700136 coding downstream 55264 10780954 ~ 10782528 (-)
LOC120554102 LOC100700411,LOC102798594,LOC101483188,LOC101163295,LOC107380935 coding downstream 60917 10775958 ~ 10776875 (-)
LOC120554094 crygs,LOC103371281,LOC102797316,LOC106575813 coding downstream 125953 10709781 ~ 10711839 (-)
LOC120554091 fam184a,LOC102306171,LOC101485268,LOC103474971,LOC108246794,LOC107092234,LOC102213346,LOC100706589 coding downstream 187860 10595089 ~ 10649932 (-)
LOC120554104 NA coding upstream 6368 10854723 ~ 10867503 (-)
LOC120554111 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC107380862,LOC101158751 coding upstream 37397 10885752 ~ 10899660 (-)
LOC120554115 NA coding upstream 82925 10931280 ~ 10947502 (-)
LOC120554116 NA coding upstream 99966 10948321 ~ 10980875 (-)
LOC120554119 NA coding upstream 118780 10967135 ~ 10989049 (-)
G233918 NA non-coding downstream 6662 10829346 ~ 10831130 (-)
LOC120554110 NA non-coding downstream 7532 10824907 ~ 10830260 (-)
G233913 NA non-coding downstream 12936 10818253 ~ 10824856 (-)
G233878 LOC101482024,LOC102799766,LOC102210491,LOC100699157,LOC103371275,LOC103151957 non-coding downstream 46028 10790360 ~ 10791764 (-)
G233876 LOC108246801,LOC102799488,LOC101482313,LOC102210781,LOC107380932,LOC101064696 non-coding downstream 49690 10786325 ~ 10788102 (-)
G233939 NA non-coding upstream 67619 10915974 ~ 10923816 (-)
LOC120554121 NA non-coding upstream 109555 10957910 ~ 10958290 (-)
G234024 NA non-coding upstream 192831 11041186 ~ 11094182 (-)
G234026 NA non-coding upstream 212456 11060811 ~ 11083168 (-)
G234032 NA non-coding upstream 303487 11151842 ~ 11152551 (-)
si:ch211-132g1.7 ptgfrn,LOC104953994 other downstream 312707 10464322 ~ 10525085 (-)
LOC120554082 NA other downstream 449859 10383688 ~ 10387933 (-)
G233703 atg13 other downstream 564933 10271069 ~ 10272859 (-)
arhgef7b arhgef7,LOC102205121,LOC101465658,LOC100696931 other downstream 660982 10152861 ~ 10176810 (-)
G233644 NA other downstream 795386 9965692 ~ 10042406 (-)
G233954 NA other upstream 100113 10948468 ~ 10969110 (-)
LOC120554127 NA other upstream 189000 11037355 ~ 11046959 (-)
LOC120554131 NA other upstream 288272 11136627 ~ 11139245 (-)
spega LOC103358966 other upstream 540197 11388552 ~ 11441926 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other upstream 610582 11458937 ~ 11489477 (-)

Expression


Co-expression Network