LOC120554275


Basic Information

Item Value
gene id LOC120554275
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16340797 ~ 16345265 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638349.1
TCGTTACCGACCTAAACACTGAGCAGGCAGCGGAGACTGGACGTTATAGGTGAACCACGTAACGGTAGAAAACCCGAGAAGCTAGTTGGTTAAGCAGAGATGGACCGACACGGGAAACGGCTAGAGGTGGTTTTAAAACCGGAAACGAAgctgcgaggagaaggttcgtTTTCTTTCTGCTCTGCTAAAGCATTCTTACGCATCCTGTTAGctggagctagctagctcctGAAGCGGATTCATTAAGGACCTTTACCGTACAGCATTTAGCCGTTTGTACGTGTATTAGTGAAAGAAGCAGCTGCGAATGGTTCCCAGTTACAGTGTCCTCCGGTTAAAGGACCAATTGACGTAATAACCGTGGTGGAAAGTGCAGCTTACGAACTCCTGCCATTGTAACCCGCGTTTGCGCGACGCGCCCGTTGTGTTCTGGCGTCGATAGACGAGGCAGGAGACAGTGTTTGGATTGTGATTGTTTACTTTGTGGAAGCTGGGGCGTCAACAGAACCAGGAGGACGTTAGCCGTGTGCGGTAAATCCGCTATGTTTAGCACCCTTAGCAAGGGCCTTAGCTTGCTAGCATTAGCCTTTCATCTGACGACAGGAACTCATTATAAAACGTCTAATGGCGAATTCGAACCACTGTTGAACAACTCGGATATTacatagaaaagaaaatagtagtaTGGCCAATTTAAAATTACAGTTAATAACTTTATAAACTGTTACCAACAAAGCGTCATCACGCTGACCTGGTCCACACTTCGGCTGTTGGAACGAACCAAAGTCGAATGTTAAAAcaatcaatactattcgaatgctgaaattCTATTCGAATGTGactttttattataataaatatgttGTCTAACGTTAGGCTGATCTCCCTCTTCTTGCCTTGGCCTACTCGCATGTGTCACTCATGTTacgtctgatgaacaataatttgtgagaaacacaaggcaatGTGAggtctaagctaacgttacgtacagagtaacgttagtacaacattgcggagctaacgttacgtacctagtaaagttagtacaagGGGGAGTGACAGCCTGTGGCTGGAAATCGTAAGAAAAAGACGGAAAATATTTTTAACGGGACTTTAATATcgacatccaccgagccaaagtGCTTATGTTAACATTAGTTAGCTCGTTCTTGTTTTCTAACTGTGTTGCGAGGTATTCACAACTTTCCTGCGAGTCCACCATGAAACACGACACTTCCTGTTGACGGTATCTCAGTTCCGGTTTAGCCTAATGCTAATGAAGCCAGCACACCAGGGATAGGCTACTCACGGTACGAACGAGAACTGATTACTGACAAGTAGTAATGCTGACGGATTAAGCAATGGCTCCTTGTGGCTCAACGTGTGCTGTTGTTGGGTGCACAAACAACACGCGAAAAATTAAGGATTTTATGAACGGGACCTGTTTGCAACATAAACGGACGCGCTTGACCTGTTGCCCAGCACCCTACACACTCCATTCAATGCCCAGGGACGAGACAAGAACACGAGAATGGTTAGCAGCCCTAAAGCTAAAAAATCCACCAAAGAGAGTTTATGTCTGTTCTTACCATTTCATCGACCACAAACCAACAGAGCTCCACCCGAATCCGGAGTTATTTCTTGGTTATGAACGACAACCAGTTAAGAAAATGCGAAAACTCATCAGGTGCAAGAATAACTTGGAGGTACAAGCTAACGCGAGTCAGACATCAGTTTCGACCAGCAACGCTGAAGTGCAGCACGAACAGGGAGAGCCTCATCTGACTGATCAGATGCTGTCCTGGACACCTGTTTGATGAGGTTTACCTGGACCCACAAGACTCCTCACAGTATGAAGGTATTGTGGGACAGGTGCCATACTTCTGCCAAGTGATGATGGTCTGAAGACAACACAGCAGCATCAGGACAGATTCAGTATCCACAGGATGACTTATGTGACCTGAGAGCCTACATTACCAGCTGACACATCCTCAGTAGAAAATAAACCCTTTAGTCTGGGTGAGGACATGATCTGGACTTTTATCTGCTactctgtgcattatgtatacacactttatatttacatttcattGACATTGACTATGAATAAAGTGCTTTATTTCTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638349.1 True 2128 lncRNA 0.45 2 16340797 16345265

Neighbor

gene id symbol gene type direction distance location
LOC120554198 NA coding downstream 30786 16289101 ~ 16310011 (-)
LOC120553996 NA coding downstream 156904 16176729 ~ 16183893 (-)
trnat-cgu_13 NA coding downstream 372611 15968114 ~ 15968186 (-)
LOC120554208 NA coding downstream 374212 15953868 ~ 15966585 (-)
LOC120553994 NA coding downstream 435767 15885644 ~ 15905030 (-)
LOC120554221 NA coding upstream 11557 16356822 ~ 16365361 (-)
LOC120554797 NA coding upstream 29512 16374777 ~ 16374965 (-)
LOC120554247 NA coding upstream 35047 16380312 ~ 16386295 (-)
trnat-agu_40 NA coding upstream 41507 16386772 ~ 16386845 (-)
LOC120554212 NA coding upstream 65495 16410760 ~ 16854135 (-)
G235351 NA non-coding downstream 16561 16322888 ~ 16324236 (-)
G235242 NA non-coding downstream 19280 16321111 ~ 16321517 (-)
G235225 NA non-coding downstream 95400 16245127 ~ 16245397 (-)
G235215 NA non-coding downstream 140206 16200332 ~ 16200591 (-)
G235208 NA non-coding downstream 208551 16131586 ~ 16132246 (-)
trnat-cgu_15 NA non-coding upstream 8612 16353877 ~ 16353949 (-)
LOC120554287 NA non-coding upstream 160326 16505591 ~ 16506631 (-)
LOC120554273 NA non-coding upstream 217539 16562804 ~ 16567091 (-)
G235357 NA non-coding upstream 336462 16681727 ~ 16711192 (-)
G235413 NA non-coding upstream 421401 16766666 ~ 16775545 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other downstream 52647 16248694 ~ 16288150 (-)
LOC120554377 LOC103355861 other downstream 1326983 14966316 ~ 15013814 (-)
G234898 NA other downstream 1491060 14847834 ~ 14849737 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 2050754 14194312 ~ 14290043 (-)
G234405 NA other downstream 3386672 12953090 ~ 12954125 (-)
G235387 NA other upstream 266718 16611983 ~ 16616316 (-)
LOC120554263 NA other upstream 390921 16736186 ~ 16742288 (-)
trnat-cgu_19 NA other upstream 410728 16755993 ~ 16756065 (-)
G235350 NA other upstream 719037 17064302 ~ 17103517 (-)
s100b LOC103360204,LOC104927403 other upstream 1389466 17734731 ~ 17745257 (-)

Expression


Co-expression Network