LOC120554279


Basic Information

Item Value
gene id LOC120554279
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15973575 ~ 15991395 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638352.1
agagttcctcctgttcctctttaatgtgtgggggctTTGTGTCCTCCTGGTCCAGACTGGAGCTCCACTCCTGCTGATGTTCTTCACCAACAATCACTTTCTGGACATCTGAAGATGGTCCCAAGACCTGGATGTAAGGATTACGTCATTTGACAACTTTGGGAAAAAGTTCTTAAAGGCCTACAAGTTAAGCCCTGATGCTTTCGTACAGATGGCGATACAACTGGCCTACTACAGAACTCCGAGAAGGTTGATTTATTGGAGAAAGCTAtaaatgcacacaaatggtacaCTAACTTGGTACACCGCAAGGCTGGATTTCAGATATGTTTTGGCGCTCAAGAACCAGGAATGAACGAAATCGTCTACGGTATCATGAACGATCACATTGATTTCACGGTGGCCAATTTTAAATCATCCAATACCGGCAAAGAAAATGGAACACATATGACCAACCCACTGCAGGATGCACTGTTGGACATGAGGGCCCTGCTGGAACAAACTACAAGAGCTGAAGCTAATCAAGACTTAAACCAATAGtgcgacattttgggaaaatgtgtttgttgcagagagtataaaaaaaatctattaataTTCTTGAGTACCATCTGGAACGAATCACTGTTGTAGACTTTCATCACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638352.1 True 646 lncRNA 0.43 4 15973575 15991395

Neighbor

gene id symbol gene type direction distance location
trnat-cgu_13 NA coding downstream 5389 15968114 ~ 15968186 (-)
LOC120554208 NA coding downstream 6990 15953868 ~ 15966585 (-)
LOC120553994 NA coding downstream 68545 15885644 ~ 15905030 (-)
trnaq-cug_39 NA coding downstream 138565 15834939 ~ 15835010 (-)
trnal-aag_20 NA coding downstream 139245 15834248 ~ 15834330 (-)
LOC120553996 NA coding upstream 185334 16176729 ~ 16183893 (-)
LOC120554198 NA coding upstream 297706 16289101 ~ 16310011 (-)
LOC120554221 NA coding upstream 365427 16356822 ~ 16365361 (-)
LOC120554797 NA coding upstream 383382 16374777 ~ 16374965 (-)
LOC120554247 NA coding upstream 388917 16380312 ~ 16386295 (-)
G235151 NA non-coding downstream 90574 15882625 ~ 15883001 (-)
G235075 zbed1 non-coding downstream 307693 15660293 ~ 15665882 (-)
G235053 NA non-coding downstream 416159 15556638 ~ 15557416 (-)
LOC120554274 NA non-coding downstream 488088 15482306 ~ 15485487 (-)
LOC120554277 NA non-coding downstream 544199 15428280 ~ 15429376 (-)
G235208 NA non-coding upstream 140191 16131586 ~ 16132246 (-)
G235215 NA non-coding upstream 208937 16200332 ~ 16200591 (-)
G235225 NA non-coding upstream 253732 16245127 ~ 16245397 (-)
G235242 NA non-coding upstream 329716 16321111 ~ 16321517 (-)
G235351 NA non-coding upstream 331493 16322888 ~ 16324236 (-)
LOC120554377 LOC103355861 other downstream 959761 14966316 ~ 15013814 (-)
G234898 NA other downstream 1123838 14847834 ~ 14849737 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other downstream 1683532 14194312 ~ 14290043 (-)
G234405 NA other downstream 3019450 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 3680432 12278519 ~ 12293143 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 257299 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 334698 16326093 ~ 16352877 (-)
G235387 NA other upstream 620588 16611983 ~ 16616316 (-)
LOC120554263 NA other upstream 744791 16736186 ~ 16742288 (-)
trnat-cgu_19 NA other upstream 764598 16755993 ~ 16756065 (-)

Expression


Co-expression Network