LOC120554283


Basic Information

Item Value
gene id LOC120554283
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 15563750 ~ 15566563 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638356.1
atgtgttttctcttctgattaaaacaaaactgtttaAACCACAGAATAAGGATCAAACAATTacgaagctaacattagctagctggCTTTTAAGACAATGTACCATGGATGTCTTAATCAATACACTGTTAAAAGTTACCGCGAAAACAATGGCTTCTCTTTAAAGtggtatggacagttttcttgGATGGAATACAGTGTAAATAAGGACGAGCTTTTCTGCAGCATGTGCAGACATTTCCCCAGCGGAGCTGACAGCCCATCAGCCAGAGAGGAGGCCCTCACTGAGGTAACATTCGTTAAGTAAAACATGTTTCATGCTTCTCACGATGTGACCATAGTCCTGAAGCATATGGATAGGATATGTTACATGTGCGATGTttgtctgatgtaggctattctaTGTCATGCAGCATGTAATTTAGATGCCTTCTCTGCTGTTTGGGTTCATGATTAGTTCccactttgtgcaataaaatggTTAATTGTATAACAGTGCTGTGCAGAGCCAATGCTGCTGGCCCCTCAACCGGTTTCTTTACCCAGTAACCCAAAAGAAGACGTAAGAATGAGCTATCACAGGGGTGGCCACACCTTAACAACCCATTACTCATACAATTCCTGAATGTTGTTCACAACCTGATATCATGTTACCTGCTTTGTGTAAATGGGTATAAAAGGTGATGTGTGTTCAGAGAAGGACCTCAACCAGCAAACAGCAACAGGTGGAATCAGAGAGCATCACAGCTTCAATCACTGCAGTCAAGACAAATCTACGGTAGACAAAACCTtaTAGCACATCCcaaaatgatgatgaagatCTATGTCATCCTCCTTCTGTGTGTTGGAATAACAACCATggctgcagcaacaacaacagctgccgaACACACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638356.1 True 896 lncRNA 0.42 3 15563750 15566563

Neighbor

gene id symbol gene type direction distance location
LOC120554262 NA coding upstream 105090 15456557 ~ 15458660 (+)
LOC120554259 NA coding upstream 107613 15450271 ~ 15456137 (+)
LOC120553993 NA coding upstream 190901 15334240 ~ 15372849 (+)
LOC120553992 hps3 coding upstream 278565 15284502 ~ 15285185 (+)
LOC120554245 NA coding upstream 493366 15061124 ~ 15070384 (+)
LOC120554210 zbed1 coding downstream 93732 15660295 ~ 15665637 (+)
LOC120554235 NA coding downstream 141967 15708530 ~ 15856139 (+)
LOC120554228 NA coding downstream 288005 15854568 ~ 15881314 (+)
trnat-agu_17 NA coding downstream 363731 15930294 ~ 15930367 (+)
trnas-uga_25 NA coding downstream 364260 15930823 ~ 15930904 (+)
LOC120554271 NA non-coding upstream 89743 15468814 ~ 15474007 (+)
LOC120554269 NA non-coding upstream 363009 15197999 ~ 15200741 (+)
G234919 NA non-coding upstream 518230 15045224 ~ 15045520 (+)
G234909 NA non-coding upstream 540011 15023439 ~ 15023739 (+)
G234908 NA non-coding upstream 543186 15020232 ~ 15020564 (+)
G235056 NA non-coding downstream 47653 15614216 ~ 15614553 (+)
G235074 NA non-coding downstream 100309 15666872 ~ 15667356 (+)
LOC120554272 NA non-coding downstream 110414 15676977 ~ 15683490 (+)
G235152 NA non-coding downstream 317200 15883763 ~ 15884010 (+)
LOC120554276 NA non-coding downstream 558898 16125461 ~ 16126791 (+)
LOC120554227 NA other upstream 521306 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 653675 14806527 ~ 14910075 (+)
G234651 NA other upstream 1418880 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 2360938 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 2538230 13002963 ~ 13025520 (+)
LOC120554234 NA other downstream 822134 16388697 ~ 16612671 (+)
trnat-cgu_20 NA other downstream 1190002 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 1193795 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 1194936 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 1195973 16762536 ~ 16762608 (+)

Expression


Co-expression Network