LOC120554419


Basic Information

Item Value
gene id LOC120554419
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 2909326 ~ 2912716 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638421.1
agagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCGGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATAGTCACAGTATTGTATGTCAcgaaataatttaataaaaaagtaagtAATAGTAcgtattatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTATGACAAAAATCtatcaaaaagtcaaaaaaagtgttattacatagttattacattgttataacatgtattaatgacaaaaaaatctatcaaaaagtttaaaaaaatgtcaaaaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGgcgtaaattatttttttgtccatgaaaaaaaaattcaaaaaaaaaatcactttttttttttttttcttaaattaggATGTTCTCTTCCTTtgtcctactctggtctctttctttctctgaggTGTCCTACTCTTCTCTGAGGTGTCCTTCtctggtctctccctttctctgagtTGTTctactctggtctctccctttctctgagaTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgagttgtcctactctggtctctccctttctctgaggtgtcctactctggtctctccctttctctgaagTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgaggTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTTGTCCCACtctggtctctccctttctctgagttgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgagttgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTTTtcctactctggtctctccctttctctgagtTTTCCTACTCTGGTCTCTGCCTGTCCTTGTCTTAATACTCTCCTACTCTCTTCTTGCCTGCACTTCCTTTCCTAGCCTCTCTTTCCTATCTGGGGGCCTATCTAAGTGCACATACGCTGATACCGAGCTGGTCTTGAACCCGTCACTGGCGCCTTTAGTGGCGAGGACAAACCAACCGCGCCACCAGCGCACGTACGCATGCAGCTGTTCTCCGGGtgtatttgtctttgtcatTCTGGGTGTAAAGCTCAAAATAAATTGACTGTTCTTGTGTTGGAACCCATAACCTTTGTGTTTCTTAACCAGCGTTCCATCACTCTGAGCTATCAGATCTGATCACCAAGCTCATGGTTAGttgtgtatttgtctttgtcatTCTGGGTGtaaaactcaaaataaattGTTTATTCCTGTATTGGAACCCATAA
>XR_005638422.1
agagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCGGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATAGTCACAGTATTGTATGTCAcgaaataatttaataaaaaagtaagtAATAGTAcgtattatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTATGACAAAAATCtatcaaaaagtcaaaaaaagtgttattacatagttattacattgttataacatgtattaatgacaaaaaaatctatcaaaaagtttaaaaaaatgtcaaaaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGgcgtaaattatttttttgtccatgaaaaaaaaattcaaaaaaaaaatcactttttttttttttttcttaaattaggATGTTCTCTTCCTTtgtcctactctggtctctttctttctctgaggTGTCCTACTCTTCTCTGAGGTGTCCTTCtctggtctctccctttctctgagtTGTTctactctggtctctccctttctctgagaTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgagttgtcctactctggtctctccctttctctgagTtgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTTGTCCCACtctggtctctccctttctctgagttgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgagttgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTTTtcctactctggtctctccctttctctgagtTTTCCTACTCTGGTCTCTGCCTGTCCTTGTCTTAATACTCTCCTACTCTCTTCTTGCCTGCACTTCCTTTCCTAGCCTCTCTTTCCTATCTGGGGGCCTATCTAAGTGCACATACGCTGATACCGAGCTGGTCTTGAACCCGTCACTGGCGCCTTTAGTGGCGAGGACAAACCAACCGCGCCACCAGCGCACGTACGCATGCAGCTGTTCTCCGGGtgtatttgtctttgtcatTCTGGGTGTAAAGCTCAAAATAAATTGACTGTTCTTGTGTTGGAACCCATAACCTTTGTGTTTCTTAACCAGCGTTCCATCACTCTGAGCTATCAGATCTGATCACCAAGCTCATGGTTAGttgtgtatttgtctttgtcatTCTGGGTGtaaaactcaaaataaattGTTTATTCCTGTATTGGAACCCATAA
>XR_005638423.1
agagccTTGTAGAGACCAGCTGAAGGAACATCTTCTCGGAGCTGAAGCTCTGAGATGAGTGCAGAGTTTCCGGACCACAACGGAGAAGTTCCTTCACTCCATTCATGCCTTCTTCTCTCCGTACTCACTGTATAGTCACAGTATTGTATGTCAcgaaataatttaataaaaaagtaagtAATAGTAcgtattatgtcaaaaaaagctcAGAAAAGTCATACATAATGTCAAAAAGTGTTATTAcatagttattacattgttataacATGTATTATGACAAAAATCtatcaaaaagtcaaaaaaagtgttattacatagttattacattgttataacatgtattaatgacaaaaaaatctatcaaaaagtttaaaaaaatgtcaaaaagtgttattacacagttgtaCACAGTACATGCCATAAAAGTGGgcgtaaattatttttttgtccatgaaaaaaaaattcaaaaaaaaaatcactttttttttttttttcttaaattaggATGTTCTCTTCCTTtgtcctactctggtctctttctttctctgaggTGTCCTACTCTTCTCTGAGGTGTCCTTCtctggtctctccctttctctgagtTGTTctactctggtctctccctttctctgagaTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgagttgtcctactctggtctctccctttctctgagTtgtcctactctggtctctccctttctctgaggTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTTGTCCCACtctggtctctccctttctctgagttgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTtgtcctactctggtctctccctttctctgagttgtcctactctggtctctccctttctcgGAGGTGTCCTACTCTTCTCTGAGTTTtcctactctggtctctccctttctctgagtTTTCCTACTCTGGTCTCTGCCTGTCCTTGTCTTAATACTCTCCTACTCTCTTCTTGCCTGCACTTCCTTTCCTAGCCTCTCTTTCCTATCTGGGGGCCTATCTAAGTGCACATACGCTGATACCGAGCTGGTCTTGAACCCGTCACTGGCGCCTTTAGTGGCGAGGACAAACCAACCGCGCCACCAGCGCACGTACGCATGCAGCTGTTCTCCGGGtgtatttgtctttgtcatTCTGGGTGTAAAGCTCAAAATAAATTGACTGTTCTTGTGTTGGAACCCATAACCTTTGTGTTTCTTAACCAGCGTTCCATCACTCTGAGCTATCAGATCTGATCACCAAGCTCATGGTTAGttgtgtatttgtctttgtcatTCTGGGTGtaaaactcaaaataaattGTTTATTCCTGTATTGGAACCCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638421.1 True 1503 lncRNA 0.42 2 2909326 2912716
XR_005638422.1 False 1399 lncRNA 0.41 3 2909326 2912716
XR_005638423.1 False 1451 lncRNA 0.41 3 2909326 2912716

Neighbor

gene id symbol gene type direction distance location
zswim2 NA coding upstream 13471 2890550 ~ 2895855 (+)
col5a2b col5a2 coding upstream 37213 2844611 ~ 2872113 (+)
trnar-ccu_19 NA coding upstream 99286 2809968 ~ 2810040 (+)
trnar-ccu_18 NA coding upstream 99742 2809512 ~ 2809584 (+)
LOC120554411 lrrc3,LOC103365961,LOC100701732 coding upstream 118653 2787426 ~ 2790673 (+)
LOC120554431 osbpl11 coding downstream 608016 3520732 ~ 3539041 (+)
LOC120554783 LOC106527415,LOC107377197,LOC103370263 coding downstream 635513 3548229 ~ 3552016 (+)
LOC120554784 LOC106527415,LOC107377197,LOC103370263 coding downstream 666030 3578746 ~ 3581403 (+)
n6amt1 n6amt1,LOC102791235 coding downstream 690181 3602897 ~ 3604527 (+)
LOC120554447 LOC102195007 coding downstream 1205202 4117918 ~ 4120596 (+)
G232023 NA non-coding upstream 27596 2878845 ~ 2881730 (+)
G232020 dfnb59,LOC102786563 non-coding upstream 70771 2836601 ~ 2838555 (+)
G232018 NA non-coding upstream 74123 2834465 ~ 2835203 (+)
G231986 NA non-coding upstream 188924 2718593 ~ 2720402 (+)
G231984 NA non-coding upstream 192497 2714977 ~ 2716829 (+)
G231982 NA non-coding downstream 2399 2915115 ~ 2954253 (+)
LOC120554422 NA non-coding downstream 28529 2941245 ~ 2945534 (+)
LOC120554415 NA non-coding downstream 33980 2946696 ~ 2949292 (+)
LOC120554421 NA non-coding downstream 36724 2949440 ~ 2950429 (+)
G232046 NA non-coding downstream 61261 2973977 ~ 3030258 (+)
G232031 NA other upstream 2840 2899813 ~ 2906486 (+)
sumo1 sumo1 other upstream 415152 2489135 ~ 2494174 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 810577 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 1117468 1716411 ~ 1791858 (+)
LOC120554068 agap1,LOC101478076 other upstream 1388262 1468168 ~ 1521064 (+)
LOC120554435 NA other downstream 640862 3553578 ~ 3590879 (+)
dock9b LOC103359855 other downstream 1427778 4340494 ~ 4399319 (+)
G232425 NA other downstream 1504448 4417164 ~ 4418102 (+)
scn1lab NA other downstream 1819746 4732462 ~ 4772995 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other downstream 1935922 4848638 ~ 4949089 (+)

Expression


Co-expression Network