LOC120554443


Basic Information

Item Value
gene id LOC120554443
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 3648259 ~ 3650261 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005638450.1
GAGCACTCTGGAGAGGAGACACATCAGAGCATGCCCAGCTGCACAAGCTCTTGTGCACTGTGCTGATTTTACAGCCAAGATTCAAGTAACTTGAAATTTTACCCTGAACACGCTGACCTCCACAACGTGTCCAAAGAGGTTTCAGCCTAGACATGAGGCGAAGGTCTGGTTTCCTGTCTCTCTGATGGACGTGCAGAGGCCAAGTCCGTACATCAGCACCACATCTATAAATCAACTCCCGGCGCCTCATCTTGTTTGGAAATGAAAGTCTTTATTGATTTTGGCTCCAACTGTACATCCGTCTCCAATTTGTACCCCATCCCTCCTTTTCTGAAGCACACTTTATTAAGCCAACTATCCATCTCTAGGCCTTGCTCACCATGAATTTATAAGtgtttgatatttatttattttttaagcctTAATGTTCCCATGGGTAAAGAACACTGAAACAAACAGATTTCATTTCAGAATGGTTCTTGGTGACTTGGGGTTGCGTTAGTTGTAAAATGTATGGGGGGTGGTGTAACGATTTTAATCGTAAGATTTATAACTGTTGTAAAAAATAAGTTGTAAAGCAAGAAAACTCATACATGCATAAAACACGGTGTACACTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005638450.1 True 620 lncRNA 0.42 3 3648259 3650261

Neighbor

gene id symbol gene type direction distance location
n6amt1 n6amt1,LOC102791235 coding upstream 43732 3602897 ~ 3604527 (+)
LOC120554784 LOC106527415,LOC107377197,LOC103370263 coding upstream 66856 3578746 ~ 3581403 (+)
LOC120554783 LOC106527415,LOC107377197,LOC103370263 coding upstream 96243 3548229 ~ 3552016 (+)
LOC120554431 osbpl11 coding upstream 109218 3520732 ~ 3539041 (+)
zswim2 NA coding upstream 752404 2890550 ~ 2895855 (+)
LOC120554447 LOC102195007 coding downstream 467657 4117918 ~ 4120596 (+)
LOC120554451 LOC103372195,LOC102795276 coding downstream 529575 4179836 ~ 4198507 (+)
nop58 nop58,LOC102781044 coding downstream 585228 4235489 ~ 4241283 (+)
LOC120554799 NA coding downstream 588266 4238527 ~ 4238610 (+)
LOC120554801 NA coding downstream 588612 4238873 ~ 4238955 (+)
LOC120554436 NA non-coding upstream 52558 3561507 ~ 3595701 (+)
G232254 NA non-coding upstream 89300 3558403 ~ 3558959 (+)
LOC120554433 NA non-coding upstream 109218 3505847 ~ 3539041 (+)
G232211 NA non-coding upstream 285465 3332334 ~ 3362794 (+)
LOC120554428 NA non-coding upstream 293245 3315070 ~ 3355014 (+)
G232298 NA non-coding downstream 3175 3653436 ~ 3744410 (+)
G232319 NA non-coding downstream 459862 4110123 ~ 4111860 (+)
LOC120554455 NA non-coding downstream 548576 4198837 ~ 4232080 (+)
trnam-cau_63 NA non-coding downstream 550301 4200562 ~ 4200634 (+)
trnak-cuu_16 NA non-coding downstream 550589 4200850 ~ 4200922 (+)
LOC120554435 NA other upstream 57380 3553578 ~ 3590879 (+)
G232031 NA other upstream 741773 2899813 ~ 2906486 (+)
sumo1 sumo1 other upstream 1154085 2489135 ~ 2494174 (+)
G231514 LOC101480717,LOC102290810,LOC102794459 other upstream 1549510 2096875 ~ 2098749 (+)
G231461 LOC107384560,LOC103366582 other upstream 1856401 1716411 ~ 1791858 (+)
dock9b LOC103359855 other downstream 690233 4340494 ~ 4399319 (+)
G232425 NA other downstream 766903 4417164 ~ 4418102 (+)
scn1lab NA other downstream 1082201 4732462 ~ 4772995 (+)
LOC120554485 LOC103354594,LOC108245699,LOC106531295,LOC107086615 other downstream 1198377 4848638 ~ 4949089 (+)
LOC120554464 LOC103354592,LOC107380990,LOC103389749,LOC106930317,LOC103147190,LOC106960073,LOC105020031,LOC106574546,LOC108438056,LOC106575308 other downstream 1353060 5003321 ~ 5041882 (+)

Expression


Co-expression Network