trnae-uuc_66


Basic Information

Item Value
gene id trnae-uuc_66
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 12985817 ~ 12985888 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1566
TCCCATATGGTCTAGCGGTTAGGATTCCTGGTTTTCACCCaggcggcccgggttcgactcccgGTATGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1566 True 72 tRNA 0.58 1 12985817 12985888

Neighbor

gene id symbol gene type direction distance location
gk LOC100693874,LOC101471943 coding downstream 1242 12961875 ~ 12984575 (-)
LOC120554795 NA coding downstream 26254 12954106 ~ 12959563 (-)
LOC120554312 NA coding downstream 31602 12951421 ~ 12954215 (-)
filip1l filip1l,LOC100693076,LOC102798342,LOC102213048 coding downstream 100719 12797844 ~ 12885098 (-)
LOC120554061 LOC101475634,LOC102213813,LOC107377203,LOC108242213,LOC106525271 coding downstream 341460 12602244 ~ 12644357 (-)
mtrf1 mtrf1,LOC104961503 coding upstream 6950 12992838 ~ 12995995 (-)
zgc:65895 tsc22d1,LOC106531085,LOC102196627,LOC106942021,LOC103477739,LOC103130603 coding upstream 35160 13021048 ~ 13048596 (-)
trnad-guc_30 NA coding upstream 70728 13056616 ~ 13056687 (-)
trnag-gcc_27 NA coding upstream 126270 13112158 ~ 13112228 (-)
LOC120554566 NA coding upstream 720362 13706250 ~ 13711834 (-)
G234375 NA non-coding downstream 199874 12783991 ~ 12785943 (-)
G234373 NA non-coding downstream 205657 12779586 ~ 12780160 (-)
G234333 NA non-coding downstream 496809 12487905 ~ 12489008 (-)
G234330 NA non-coding downstream 498487 12436996 ~ 12487330 (-)
G234328 NA non-coding downstream 551074 12432847 ~ 12434743 (-)
G234434 NA non-coding upstream 2485 12988373 ~ 12991438 (-)
G234478 NA non-coding upstream 175844 13161732 ~ 13162096 (-)
G234490 NA non-coding upstream 214090 13199978 ~ 13200294 (-)
G234491 NA non-coding upstream 217034 13202922 ~ 13205960 (-)
G234523 NA non-coding upstream 445093 13430981 ~ 13439811 (-)
G234405 NA other downstream 31692 12953090 ~ 12954125 (-)
G234253 LOC103139183,LOC106940425,LOC106914874 other downstream 692674 12278519 ~ 12293143 (-)
igfbp5a igfbp5,LOC103371819,LOC104928322,LOC101465019 other downstream 1447496 11524382 ~ 11538321 (-)
LOC120554153 LOC101072154,LOC104957764,LOC103371815,LOC107377212,LOC108242182 other downstream 1496340 11458937 ~ 11489477 (-)
spega LOC103358966 other downstream 1543891 11388552 ~ 11441926 (-)
arhgap1 arhgap1,LOC101474800,LOC102196105 other upstream 1208424 14194312 ~ 14290043 (-)
G234898 NA other upstream 1861946 14847834 ~ 14849737 (-)
LOC120554377 LOC103355861 other upstream 1980428 14966316 ~ 15013814 (-)
LOC120554197 LOC107380983,LOC108241855,LOC108242155,LOC102792843,LOC102297898,LOC102783771 other upstream 3262806 16248694 ~ 16288150 (-)
LOC120554218 NA other upstream 3340205 16326093 ~ 16352877 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G246597 NA non-coding CI01000057 null 4532796 ~ 4534368 (-)
rainbow trout (Oncorhynchus mykiss) trnae-uuc-61 NA coding NC_050571.1 CM025858.1 41304115 ~ 41304186 (+)
striped catfish (Pangasianodon hypophthalmus) trnae-uuc_18 NA coding NC_047613.1 CM018559.1 21210182 ~ 21210253 (-)
mexican tetra (Astyanax mexicanus) trnae-uuc_18 NA misc NC_035911.1 CM008314.1 24810929 ~ 24811000 (+)
mexican tetra (Astyanax mexicanus) trnae-uuc_29 NA misc NW_019172086.1 APWO02001684.1 9563 ~ 9634 (+)