trnat-agu_48


Basic Information

Item Value
gene id trnat-agu_48
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 16516508 ~ 16516581 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_1660
GGTGCTGTGGCTTAGTTGGTGAAAGTGCCTGTCTAGTAAACAGGAgatcctgggttcaaatcccagcagcACCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1660 True 74 tRNA 0.51 1 16516508 16516581

Neighbor

gene id symbol gene type direction distance location
trnas-uga_33 NA coding upstream 14355 16502072 ~ 16502153 (+)
LOC120554222 NA coding upstream 15223 16494132 ~ 16501285 (+)
trnat-ugu_42 NA coding upstream 291681 16224755 ~ 16224827 (+)
LOC120554255 NA coding upstream 295822 16201422 ~ 16220686 (+)
LOC120553997 NA coding upstream 321656 16183840 ~ 16194852 (+)
trnak-cuu_44 NA coding downstream 106102 16622683 ~ 16622755 (+)
trnat-agu_53 NA coding downstream 106422 16623003 ~ 16623076 (+)
LOC120554238 NA coding downstream 127061 16643642 ~ 16658812 (+)
LOC120554253 dhrsx,LOC104961879 coding downstream 143222 16659803 ~ 16674690 (+)
LOC120554242 NA coding downstream 164447 16681028 ~ 16683511 (+)
trnak-cuu_39 NA non-coding upstream 251 16516185 ~ 16516257 (+)
trnat-agu_47 NA non-coding upstream 1197 16515238 ~ 16515311 (+)
trnat-agu_46 NA non-coding upstream 2461 16513974 ~ 16514047 (+)
trnak-cuu_38 NA non-coding upstream 2802 16513634 ~ 16513706 (+)
trnak-cuu_37 NA non-coding upstream 3376 16513059 ~ 16513132 (+)
trnak-cuu_40 NA non-coding downstream 877 16517458 ~ 16517530 (+)
trnat-agu_49 NA non-coding downstream 1200 16517781 ~ 16517854 (+)
trnak-cuu_41 NA non-coding downstream 2148 16518729 ~ 16518801 (+)
trnat-agu_50 NA non-coding downstream 2471 16519052 ~ 16519125 (+)
trnak-cuu_42 NA non-coding downstream 3417 16519998 ~ 16520070 (+)
LOC120554227 NA other upstream 1474064 15028838 ~ 15042444 (+)
LOC120554715 LOC103355859,LOC104964875 other upstream 1606433 14806527 ~ 14910075 (+)
G234651 NA other upstream 2371638 14115859 ~ 14144870 (+)
LOC120554638 tmem47,LOC104936888,LOC106530717,LOC102201289 other upstream 3313696 13169370 ~ 13202812 (+)
G234425 tsc22d1,LOC106531085,LOC102196627 other upstream 3490988 13002963 ~ 13025520 (+)
trnat-cgu_20 NA other downstream 239984 16756565 ~ 16756637 (+)
trnat-ugu_43 NA other downstream 243777 16760358 ~ 16760430 (+)
trnat-agu_56 NA other downstream 244918 16761499 ~ 16761572 (+)
trnat-cgu_21 NA other downstream 245955 16762536 ~ 16762608 (+)
LOC120554243 NA other downstream 364058 16880639 ~ 16932606 (+)

Expression


Co-expression Network